Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/K10C9.3
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Query:  K10C9.3  CE28601   ribonuclease status:Partially_confirmed TR:O61887 protein_id:AAC17670.2

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
ribonuclease_T2 Ribonuclease T2 family                  141.4    1.6e-38   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
ribonuclease_T2   1/1      23   214 ..     1   215 []   141.4  1.6e-38

Alignments of top-scoring domains:
ribonuclease_T2: domain 1 of 1, from 23 to 214: score 141.4, E = 1.6e-38
                   *->FDyfqlVlqWPpsfChskp.......cCkrptgkppknFTIHGLWPd
                      FDy+ ++  +P+++C+   ++++ +++C+ p+     ++ IHGLWP+
     K10C9.3    23    FDYLMFTTIYPTAVCR--AdddsvpeSCEIPS--GTPQWSIHGLWPN 65

                   nkcdgtypnnCdspskkfdkSvitisdssnllsqLekrWPdLtcpradgg
                    + +g+yp+nC      fd+    i++   ++++L + WP+L  p+   +
     K10C9.3    66 FE-NGSYPQNCRGTPRHFDE--NLIKS---IEDRLVVVWPNLY-PK---K 105

                   dnqsFWehEWeKHGTCcetDPCydyselyn.qedYFelAlkLkdkqKfdL
                     qsFW+hE+ KHGTC++      +++l++++ +YF  ++k +d+  +d+
     K10C9.3   106 TIQSFWKHEYDKHGTCAQ------SEKLFEsELAYFTEVMKVFDS--IDV 147

                   LtiLrnaGItPgggktytlddIenAIktvtngvtPnLkCtkdsselrkgv
                      L++ G  P+  k  t++d++nA+  vt g+t  ++C +d +     +
     K10C9.3   148 AGGLKSVG--PSE-KPITSSDLKNALSGVTSGKTFQFHCLRDKK---TKQ 191

                   seLyEIgiCfdpnatefidCprppkt<-*
                     L  I++C+++++ +  dCp   ++
     K10C9.3   192 FLLGDIRLCLNKDL-TIRDCP--TDG    214



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