Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/K10C9.3
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Query: K10C9.3 CE28601 ribonuclease status:Partially_confirmed TR:O61887 protein_id:AAC17670.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ribonuclease_T2 Ribonuclease T2 family 141.4 1.6e-38 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
ribonuclease_T2 1/1 23 214 .. 1 215 [] 141.4 1.6e-38
Alignments of top-scoring domains:
ribonuclease_T2: domain 1 of 1, from 23 to 214: score 141.4, E = 1.6e-38
*->FDyfqlVlqWPpsfChskp.......cCkrptgkppknFTIHGLWPd
FDy+ ++ +P+++C+ ++++ +++C+ p+ ++ IHGLWP+
K10C9.3 23 FDYLMFTTIYPTAVCR--AdddsvpeSCEIPS--GTPQWSIHGLWPN 65
nkcdgtypnnCdspskkfdkSvitisdssnllsqLekrWPdLtcpradgg
+ +g+yp+nC fd+ i++ ++++L + WP+L p+ +
K10C9.3 66 FE-NGSYPQNCRGTPRHFDE--NLIKS---IEDRLVVVWPNLY-PK---K 105
dnqsFWehEWeKHGTCcetDPCydyselyn.qedYFelAlkLkdkqKfdL
qsFW+hE+ KHGTC++ +++l++++ +YF ++k +d+ +d+
K10C9.3 106 TIQSFWKHEYDKHGTCAQ------SEKLFEsELAYFTEVMKVFDS--IDV 147
LtiLrnaGItPgggktytlddIenAIktvtngvtPnLkCtkdsselrkgv
L++ G P+ k t++d++nA+ vt g+t ++C +d + +
K10C9.3 148 AGGLKSVG--PSE-KPITSSDLKNALSGVTSGKTFQFHCLRDKK---TKQ 191
seLyEIgiCfdpnatefidCprppkt<-*
L I++C+++++ + dCp ++
K10C9.3 192 FLLGDIRLCLNKDL-TIRDCP--TDG 214