Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/K10D2.3
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Query: K10D2.3 CE02015 status:Partially_confirmed TR:Q09409 protein_id:AAA62541.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PAP_assoc PAP/25A associated domain 152.1 1.3e-42 2
zf-CCHC Zinc knuckle 13.2 0.11 1
zf-C2H2 Zinc finger, C2H2 type 9.1 3.4 1
NTP_transf_2 Nucleotidyltransferase domain 8.0 0.93 1
AMP_N Aminopeptidase P, N-terminal domain 6.5 1.7 1
UPF0185 Uncharacterised protein family (UPF0185 3.7 5.8 1
Lysyl_oxidase Lysyl oxidase 3.7 6.9 1
PHD PHD-finger 3.2 7.7 1
DUF610 Protein of unknown function (DUF610) 2.5 9.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF610 1/1 117 134 .. 65 82 .. 2.5 9.8
PHD 1/1 268 280 .. 39 51 .] 3.2 7.7
zf-C2H2 1/1 272 296 .. 1 24 [] 9.1 3.4
UPF0185 1/1 371 403 .. 1 33 [. 3.7 5.8
AMP_N 1/1 540 565 .. 1 28 [. 6.5 1.7
PAP_assoc 1/2 574 625 .. 1 67 [] 63.4 6.5e-17
NTP_transf_2 1/1 1030 1071 .. 1 43 [. 8.0 0.93
Lysyl_oxidase 1/1 1169 1178 .. 197 206 .] 3.7 6.9
PAP_assoc 2/2 1245 1296 .. 1 67 [] 89.5 1.8e-24
zf-CCHC 1/1 1355 1372 .. 1 18 [] 13.2 0.11
Alignments of top-scoring domains:
DUF610: domain 1 of 1, from 117 to 134: score 2.5, E = 9.8
*->pEkntLtpemskeeiekr<-*
pEk t++++++++e++k+
K10D2.3 117 PEKTTINVAGRQAEANKK 134
PHD: domain 1 of 1, from 268 to 280: score 3.2, E = 7.7
*->pegkWlCpeCtpk<-*
pe ++C++C+ +
K10D2.3 268 PEAIYYCEKCDYH 280
zf-C2H2: domain 1 of 1, from 272 to 296: score 9.1, E = 3.4
*->ykCpfdCgksFsrksnLkrHlrt..H<-*
y C+ +C++ ++ ++ k+Hl +++H
K10D2.3 272 YYCE-KCDYHINTIGHAKAHLESstH 296
UPF0185: domain 1 of 1, from 371 to 403: score 3.7, E = 5.8
*->msKvsFKvtL.tsDPkLPyKvlsvPEsaPFtAvL<-*
+ v + vtL+ sD + y +s+PE++P A L
K10D2.3 371 FGSVTYDVTLpDSDYNVAY-TMSIPEGTPIFALL 403
AMP_N: domain 1 of 1, from 540 to 565: score 6.5, E = 1.7
*->ipaeeyaeHRRkrLmeqlqpnssssdsa<-*
++ ee + RR rLm++ ++n+ +++++
K10D2.3 540 LQSEEAGQ-RRMRLMSRYEKNT-EKIGT 565
PAP_assoc: domain 1 of 2, from 574 to 625: score 63.4, E = 6.5e-17
*->sLGvLLigFFeyYgrreFdyedfvIsirtGqsgsllpKeekgwdkkn
+L++L+igFF+yY +r ++d+vI+i + ++++++++w+kk
K10D2.3 574 NLAELFIGFFRYYVER---HRDVVIQIT---QLIPMSRDVSRWNKK- 613
vlnirqpspLcIeDPfdtsn<-*
+L+++DPf +n
K10D2.3 614 --------ILHVVDPFRGDN 625
NTP_transf_2: domain 1 of 1, from 1030 to 1071: score 8.0, E = 0.93
*->ieeilkkikealkelygavaevylfGSyarGtylpgdSDIDll<-*
++ +++++ +l+++y +++ + fGS+ +G+ SDID++
K10D2.3 1030 LDHKIDELQSFLRKNYREDVTLTTFGSVMTGLSVNC-SDIDIC 1071
Lysyl_oxidase: domain 1 of 1, from 1169 to 1178: score 3.7, E = 6.9
*->yasnChigda<-*
+a nC+igda
K10D2.3 1169 WAKNCEIGDA 1178
PAP_assoc: domain 2 of 2, from 1245 to 1296: score 89.5, E = 1.8e-24
*->sLGvLLigFFeyYgrreFdyedfvIsirtGqsgsllpKeekgwdkkn
s+++LLig+F+yY+r Fd+++fv+++r + ++l+K+ek w+++
K10D2.3 1245 SCAQLLIGYFDYYSR--FDFRNFVVQCR---REMILSKMEKEWPRP- 1285
vlnirqpspLcIeDPfdtsn<-*
Lc+eDPfd+s+
K10D2.3 1286 ---------LCVEDPFDLSH 1296
zf-CCHC: domain 1 of 1, from 1355 to 1372: score 13.2, E = 0.11
*->rkCynCGkpGHiardCpe<-*
r+C+ C + GH+ Cp+
K10D2.3 1355 RQCHQCHRIGHFVESCPQ 1372
[output cut off at A = 10 top alignments]