Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/K10D2.2
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Query: K10D2.2 CE27429 status:Partially_confirmed TR:Q09408 protein_id:AAA62540.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PAP_assoc PAP/25A associated domain 72.6 1.4e-19 1
MukE MukE-like family 2.4 4.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PAP_assoc 1/1 355 407 .. 1 67 [] 72.6 1.4e-19
MukE 1/1 406 460 .. 1 56 [. 2.4 4.8
Alignments of top-scoring domains:
PAP_assoc: domain 1 of 1, from 355 to 407: score 72.6, E = 1.4e-19
*->sLGvLLigFFeyYgrreFdyedfvIsirtGqsgsllpKeekgwdkkn
s+ +L++gF++yY++ +Fdy +vI++ s++l+ ++d+
K10D2.2 355 SVVDLFVGFLDYYAT-YFDYSTNVIQMV---SKKLE----FKPDR-- 391
vlnirqpspLcIeDPfdtsn<-*
++++p+cI+DPf+t++
K10D2.2 392 ----WCKYPMCIADPFETDH 407
MukE: domain 1 of 1, from 406 to 460: score 2.4, E = 4.8
*->mpekLAkAiAnPlFPAlDslLRsGRHissdeLDnHAFLmDFqeeLee
++LA+ + P+F + s + + + +d FL+ + +++e
K10D2.2 406 -DHNLAQGVDMPMFEYIRSCMEHSKKVFTDRRMRSEFLSGYGFDVDE 451
FYrRYnvEL<-*
F +R E+
K10D2.2 452 FDARHRGEM 460