Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/K10D2.6
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Query: K10D2.6 CE02018 NADPH-cytochrome P450 status:Confirmed TR:Q09590 protein_id:AAA62544.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
FAD_binding_1 FAD binding domain 278.9 6.4e-80 1
flavodoxin Flavodoxin 168.8 2.8e-48 1
NAD_binding_1 Oxidoreductase NAD-binding domain 122.1 1.8e-33 1
N6_N4_Mtase DNA methylase 4.4 2.2 1
Alpha_adaptin_C Alpha adaptin AP2, C-terminal domain 1.7 9.2 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
N6_N4_Mtase 1/1 177 193 .. 219 239 .] 4.4 2.2
flavodoxin 1/1 72 220 .. 1 173 [] 168.8 2.8e-48
Alpha_adaptin_C 1/1 417 426 .. 104 113 .] 1.7 9.2
FAD_binding_1 1/1 265 484 .. 1 238 [] 278.9 6.4e-80
NAD_binding_1 1/1 510 627 .. 1 133 [] 122.1 1.8e-33
Alignments of top-scoring domains:
N6_N4_Mtase: domain 1 of 1, from 177 to 193: score 4.4, E = 2.2
*->IGiEieeeyveiaAyfskkRl<-*
IGi+++++ ++ kR+
K10D2.6 177 IGIQMDKQLEKLG----AKRI 193
flavodoxin: domain 1 of 1, from 72 to 220: score 168.8, E = 2.8e-48
*->KilIlYgSqTGnteklAealaeglkeagfevkvvsvddvdetldD.e
++lI YgSqTG++e + +la++l + k v+vd +d+ ++D +
K10D2.6 72 QVLIMYGSQTGTAEEMSGRLAKDLTRYTK--KAVVVDPEDIECEDlN 116
.ieeleeedlvlfvtsTyGeGeppdnakpfedwlllfglptrfpdsdtle
+++e+e+ +l++++++TyGeG+p+dna+ +++ l+
K10D2.6 117 rLSEVED-ALLVLCIATYGEGDPTDNAVTLVEYLNAG------------- 152
ggdLsglkyavfGlGDsgyegFcgaakkldekLselGakrlgpwPtGYFF
+ dLsg+++avfGlG+++ye+F+++++++d+ L++lGakr++
K10D2.6 153 DCDLSGVRFAVFGLGNKTYEHFNEIGIQMDKQLEKLGAKRIF-------- 194
plgegdedpqdgleeafeaWaelvakal<-*
+lg+gd+d +lee+f W+e +++++
K10D2.6 195 HLGLGDDDA--NLEEDFMIWREAFLPKV 220
Alpha_adaptin_C: domain 1 of 1, from 417 to 426: score 1.7, E = 9.2
*->reLcdLLtdQ<-*
r ++d LtdQ
K10D2.6 417 RSIVDVLTDQ 426
FAD_binding_1: domain 1 of 1, from 265 to 484: score 278.9, E = 6.4e-80
*->ppfdaknpFlasvvvnreLtkpgsdRsciHlElDisgsqLPEglrYq
ppfd knp+la+v+ n eL++ sdRsc+H+E+ ++gs +rY+
K10D2.6 265 PPFDVKNPYLATVAINDELHTEHSDRSCRHIEFSVEGS----RIRYE 307
tGDHlGVyPrNneelVeellellgldpkpdtvvsLkaldedGgplsssvk
GDHl+V+P N++ lV++l+ l dp d ++L + ded s++
K10D2.6 308 AGDHLAVFPTNDPVLVDRLINMLQFDP--DHAFRLVNVDED-----ASKR 350
hpflpptTlrqALtyyldItgvpPtkqlleaLAeyAsdeeekqeLeaLas
hpf++ptT r+AL +y+dI+ p++ ++l+a+ ey++d++ek++L +L++
K10D2.6 351 HPFPCPTTFRTALSHYVDICA-PVKSHVLKAISEYCTDDTEKEFLNKLST 399
dkpaGkveykrwklnkartllevLeeFPsaklPaeVfLlellPrLqPRYY
+G +ey r ++ ++r++++vL + + +k+P+e LlellPrLq RYY
K10D2.6 400 ANEEGLKEYARYIVKERRSIVDVLTDQKTCKPPIE-YLLELLPRLQARYY 448
SISSSpkvhpneVHlTvvVVeyetrdldgeGrirkGvaSny<-*
SI+SSp+ + ++ +++vV +y r+ Gv++ y
K10D2.6 449 SIASSPRLNEEKIAICAVVTKYS-----IGDRDINGVCTRY 484
NAD_binding_1: domain 1 of 1, from 510 to 627: score 122.1, E = 1.8e-33
*->arplimiAGGTGiaPfrsflqailedqpeDgedyketgkvvLvyGnr
+ +imi++GTG+aPfr+flq +++ + + ke g ++L+yG+r
K10D2.6 510 TTQVIMIGPGTGFAPFRGFLQDRQFHKNAG----KEIGAMHLYYGCR 552
n.eeDllyreELeelakkhprdnfklvyvvsrpqpsdedwkggkGyVqda
++++D++y++EL +++ +lv ++sr+q e+ k yVqd+
K10D2.6 553 HpDHDYIYKDELAKFQEDE--VLTHLVCAFSRAQ---EH----KIYVQDR 593
lledhapelfelldggkdtdiYvCGPpkgMieaarkl<-*
l e + +++ + g +++Y+CG++++M+++++ +
K10D2.6 594 LWET-RDRIWDAINVG--AHVYICGDARNMARDVQAT 627