Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/K10H10.3
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Query: K10H10.3 CE16253 locus:dhs-8 Alcohol\/other dehydrogenases, short chain type status:Partially_confirmed TR:O45680 protein_id:CAB05779.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
adh_short short chain dehydrogenase 68.4 2.7e-18 1
ADH_zinc_N Zinc-binding dehydrogenase 2.9 5.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
ADH_zinc_N 1/1 74 113 .. 211 255 .. 2.9 5.9
adh_short 1/1 84 286 .. 1 191 [. 68.4 2.7e-18
Alignments of top-scoring domains:
ADH_zinc_N: domain 1 of 1, from 74 to 113: score 2.9, E = 5.9
*->aygalvraakvgslppGdtVlVhGaGGGVGlaAvqlAkaaGAarV<-
a+ +l+ + G+t ++ G G+G+ ++ + +aGA++V
K10H10.3 74 AFEVLKGIDVS-----GKTFAITGTTSGIGINTAEVLALAGAHVV 113
*
K10H10.3 - -
adh_short: domain 1 of 1, from 84 to 286: score 68.4, E = 2.7e-18
*->tgKvaLvTGassGIGlaiAkrLakeGakVvvvdrreekae.qvaael
+gK+ +TG +sGIG +A+ La +Ga+Vv+ r++ + e+q+ l
K10H10.3 84 SGKTFAITGTTSGIGINTAEVLALAGAHVVLMNRNLHESEnQKKRIL 130
kaelGdralfiqlDvtdeeqvkaavaqaverlGd...rlDvLVNNAGilg
++ +++ i +D++d +v +a e + +++ ++++L+ NAG+ +
K10H10.3 131 EKKPSAKVDIIFCDLSDLK----TVRKAGEDYLAknwPIHGLILNAGVFR 176
dgppfeelseedwervidvNltGvflltravlpamdhmlkrkgGrIvNis
++++ +++ +e+ + vN+++ f l r +lp + r+v+ s
K10H10.3 177 -PAAAK--TKDGFESHYGVNVVAHFTLLRILLP---VVRRSAPSRVVFLS 220
SvaGlr....................vgvpglsaYsASKaavigltrsLA
S + +++ +++ + +++ + ++++ l Y+ASK a + L+
K10H10.3 221 STLSSKhgfkksmgisekmsilqgedSSASTLQMYGASKMADMLIAFKLH 270
lElaphgtgIrVnavaPG<-*
++ ++ g I +v+PG
K10H10.3 271 RDEYKNG--ISTYSVHPG 286