Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/K10H10.3
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Query:  K10H10.3  CE16253  locus:dhs-8 Alcohol\/other dehydrogenases, short chain type status:Partially_confirmed TR:O45680 protein_id:CAB05779.1

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N
--------   -----------                                  -----    ------- ---
adh_short  short chain dehydrogenase                     68.4    2.7e-18   1
ADH_zinc_N Zinc-binding dehydrogenase                     2.9        5.9   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
ADH_zinc_N   1/1      74   113 ..   211   255 ..     2.9      5.9
adh_short    1/1      84   286 ..     1   191 [.    68.4  2.7e-18

Alignments of top-scoring domains:
ADH_zinc_N: domain 1 of 1, from 74 to 113: score 2.9, E = 5.9
                   *->aygalvraakvgslppGdtVlVhGaGGGVGlaAvqlAkaaGAarV<-
                      a+ +l+   +      G+t ++ G   G+G+ ++ +  +aGA++V
    K10H10.3    74    AFEVLKGIDVS-----GKTFAITGTTSGIGINTAEVLALAGAHVV   113

                   *

    K10H10.3     -   -

adh_short: domain 1 of 1, from 84 to 286: score 68.4, E = 2.7e-18
                   *->tgKvaLvTGassGIGlaiAkrLakeGakVvvvdrreekae.qvaael
                      +gK+  +TG +sGIG  +A+ La +Ga+Vv+  r++ + e+q+   l
    K10H10.3    84    SGKTFAITGTTSGIGINTAEVLALAGAHVVLMNRNLHESEnQKKRIL 130

                   kaelGdralfiqlDvtdeeqvkaavaqaverlGd...rlDvLVNNAGilg
                   ++   +++  i +D++d      +v +a e + +++ ++++L+ NAG+ +
    K10H10.3   131 EKKPSAKVDIIFCDLSDLK----TVRKAGEDYLAknwPIHGLILNAGVFR 176

                   dgppfeelseedwervidvNltGvflltravlpamdhmlkrkgGrIvNis
                    ++++   +++ +e+ + vN+++ f l r +lp      +    r+v+ s
    K10H10.3   177 -PAAAK--TKDGFESHYGVNVVAHFTLLRILLP---VVRRSAPSRVVFLS 220

                   SvaGlr....................vgvpglsaYsASKaavigltrsLA
                   S  + +++ +++ + +++ +  ++++     l  Y+ASK a    +  L+
    K10H10.3   221 STLSSKhgfkksmgisekmsilqgedSSASTLQMYGASKMADMLIAFKLH 270

                   lElaphgtgIrVnavaPG<-*
                   ++ ++ g  I   +v+PG
    K10H10.3   271 RDEYKNG--ISTYSVHPG    286



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