Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/K11E8.1l
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Query: K11E8.1l CE28061 Ca2+\/calmodulin-dependent protein kinase status:Confirmed TR:Q9NH55 protein_id:CAC42367.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
pkinase Protein kinase domain 331.5 9.6e-96 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
pkinase 1/1 12 269 .. 1 294 [] 331.5 9.6e-96
Alignments of top-scoring domains:
pkinase: domain 1 of 1, from 12 to 269: score 331.5, E = 9.6e-96
*->yelleklGeGsfGkVykakhkdktgkiVAvKilkkekesikek...r
y ++e+lG+G+f++V++++hk tg ++A Ki++ +++++++ +
K11E8.1l 12 YDVKEELGKGAFSVVRRCVHK-TTGLEFAAKIIN--TKKLSARdfqK 55
flrEiqilkrLsHpNIvrligvfedtddhlylvmEymegGdLfdylrrng
+ rE++i ++L+HpNIvrl+++ + +++ ylv++++ gG+Lf+ ++++
K11E8.1l 56 LEREARICRKLQHPNIVRLHDSIQ-EESFHYLVFDLVTGGELFEDIVARE 104
gplsekeakkialQilrGleYLHsngivHRDLKpeNILlden..dgtvKi
+se +a +++ Qil+ ++Y+HsngivHRDLKpeN+Ll ++ ++ vK+
K11E8.1l 105 -FYSEADASHCIQQILESIAYCHSNGIVHRDLKPENLLLASKakGAAVKL 153
aDFGLArllesssklttfvGTpwYmmAPEvilegrgysskvDvWSlGviL
aDFGLA ++++s+ ++f GTp+Y +PEv l+ ++ys++vD+W++GviL
K11E8.1l 154 ADFGLAIEVNDSEAWHGFAGTPGYL-SPEV-LKKDPYSKPVDIWACGVIL 201
yElltggplfpgadlpaftggdevdqliifvlklPfsdelpktridplee
y ll g +Pf+d + + + +++
K11E8.1l 202 YILLVG--------------------------YPPFWD---EDQHRLYAQ 222
lfriikrpglrlplpsncSeelkdLlkkcLnkDPskRpGsatakeilnhp
+ ++ ++ +++p ++++ +e+k+L++++L+++P+kR+ ta ++l+ p
K11E8.1l 223 IKAGAYD--YPSPEWDTVTPEAKSLIDSMLTVNPKKRI---TADQALKVP 267
wf<-*
w+
K11E8.1l 268 WI 269