hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/K11E8.1b
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Query:  K11E8.1b  CE28052  locus:unc-43 calcium\/calmodulin dependent protein kinase status:Partially_confirmed TR:O62304 protein_id:CAA94243.3

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
pkinase  Protein kinase domain                          144.5    1.8e-39   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
pkinase    1/1      12   136 ..     1   127 [.   144.5  1.8e-39

Alignments of top-scoring domains:
pkinase: domain 1 of 1, from 12 to 136: score 144.5, E = 1.8e-39
                   *->yelleklGeGsfGkVykakhkdktgkiVAvKilkkekesikek...r
                      y ++e+lG+G+f++V++++hk  tg ++A Ki++   +++++++ +
    K11E8.1b    12    YDVKEELGKGAFSVVRRCVHK-TTGLEFAAKIIN--TKKLSARdfqK 55

                   flrEiqilkrLsHpNIvrligvfedtddhlylvmEymegGdLfdylrrng
                   + rE++i ++L+HpNIvrl+++ + +++  ylv++++ gG+Lf+ ++++
    K11E8.1b    56 LEREARICRKLQHPNIVRLHDSIQ-EESFHYLVFDLVTGGELFEDIVARE 104

                   gplsekeakkialQilrGleYLHsngivHRDLK<-*
                     +se +a +++ Qil G++Y+H +givHRD+K
    K11E8.1b   105 -FYSEADASCCIMQILDGVNYCHQRGIVHRDMK    136

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