Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/K11G12.5
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Query: K11G12.5 CE02827 mitochondrial 2-oxoglutartae status:Confirmed TR:Q27322 protein_id:AAC46570.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
mito_carr Mitochondrial carrier protein 247.9 1.4e-70 3
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
mito_carr 1/3 7 97 .. 1 125 [] 94.6 1.9e-24
mito_carr 2/3 98 195 .. 1 125 [] 73.5 1.1e-18
mito_carr 3/3 198 288 .. 1 125 [] 86.4 3.1e-22
Alignments of top-scoring domains:
mito_carr: domain 1 of 3, from 7 to 97: score 94.6, E = 1.9e-24
*->sflksllaGgiAGaiaatvtyPlDvvKtRLQtqgssslskssvnsdv
+ l ++ Gg+AGa+aa++t+PlD++K++LQtq++++l+
K11G12.5 7 KRLGRWYFGGVAGAMAACCTHPLDLLKVQLQTQQQGKLT-------- 45
gksksyrsakksnasasrkYkgildcfkkivkeEGliktrgLYkGlgpnl
i + ki+k++G++ ++Y G+++++
K11G12.5 46 ----------------------IGQLSLKIYKNDGIL---AFYNGVSASV 70
lrvapygaaiyFgtYEqlKklllkkkge<-*
lr+ y + +Fg+YE++Kk l+ + +
K11G12.5 71 LRQLTY-STTRFGIYETVKKQLPQDQPL 97
mito_carr: domain 2 of 3, from 98 to 195: score 73.5, E = 1.1e-18
*->sflksllaGgiAGaiaatvtyPlDvvKtRLQtqgssslskssvnsdv
+f++ +l +g+AGa++ +v++P D+v +R+Q++++ +l +
K11G12.5 98 PFYQKALLAGFAGACGGMVGTPGDLVNVRMQNDSKLPLEQ------- 137
gksksyrsakksnasasrkYkgildcfkkivkeEGliktrgLYkGlgpnl
+r Yk +ld++++i +eEG++ + G +++
K11G12.5 138 ----------------RRNYKHALDGLVRITREEGFM---KMFNGATMAT 168
lrvapygaaiyFgtYEqlKklllkkkge<-*
r++ + ++++Y+q+K+ l++++
K11G12.5 169 SRAILM-TIGQLSFYDQIKQTLISSGVA 195
mito_carr: domain 3 of 3, from 198 to 288: score 86.4, E = 3.1e-22
*->sflksllaGgiAGaiaatvtyPlDvvKtRLQtqgssslskssvnsdv
++ ++++++ A+ +a+++t+PlDv KtR+++ +
K11G12.5 198 NLQTHFASSISAASVATVMTQPLDVMKTRMMNAAPG----------- 233
gksksyrsakksnasasrkYkgildcfkkivkeEGliktrgLYkGlgpnl
++kgildcf+ + k G++ g++kG++p++
K11G12.5 234 ------------------EFKGILDCFMFTAK-LGPM---GFFKGFIPAW 261
lrvapygaaiyFgtYEqlKklllkkkge<-*
+r ap ++ ++F ++Eql+ ++ +
K11G12.5 262 ARLAP-HTVLTFIFFEQLRLKFGYAPPV 288