Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/K11G12.5
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Query:  K11G12.5  CE02827   mitochondrial 2-oxoglutartae status:Confirmed TR:Q27322 protein_id:AAC46570.1

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N
--------  -----------                                   -----    ------- ---
mito_carr Mitochondrial carrier protein                 247.9    1.4e-70   3

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
mito_carr   1/3       7    97 ..     1   125 []    94.6  1.9e-24
mito_carr   2/3      98   195 ..     1   125 []    73.5  1.1e-18
mito_carr   3/3     198   288 ..     1   125 []    86.4  3.1e-22

Alignments of top-scoring domains:
mito_carr: domain 1 of 3, from 7 to 97: score 94.6, E = 1.9e-24
                   *->sflksllaGgiAGaiaatvtyPlDvvKtRLQtqgssslskssvnsdv
                      + l ++  Gg+AGa+aa++t+PlD++K++LQtq++++l+
    K11G12.5     7    KRLGRWYFGGVAGAMAACCTHPLDLLKVQLQTQQQGKLT-------- 45

                   gksksyrsakksnasasrkYkgildcfkkivkeEGliktrgLYkGlgpnl
                                         i +   ki+k++G++   ++Y G+++++
    K11G12.5    46 ----------------------IGQLSLKIYKNDGIL---AFYNGVSASV 70

                   lrvapygaaiyFgtYEqlKklllkkkge<-*
                   lr+  y +  +Fg+YE++Kk l+ + +
    K11G12.5    71 LRQLTY-STTRFGIYETVKKQLPQDQPL    97

mito_carr: domain 2 of 3, from 98 to 195: score 73.5, E = 1.1e-18
                   *->sflksllaGgiAGaiaatvtyPlDvvKtRLQtqgssslskssvnsdv
                      +f++ +l +g+AGa++ +v++P D+v +R+Q++++ +l +
    K11G12.5    98    PFYQKALLAGFAGACGGMVGTPGDLVNVRMQNDSKLPLEQ------- 137

                   gksksyrsakksnasasrkYkgildcfkkivkeEGliktrgLYkGlgpnl
                                   +r Yk +ld++++i +eEG++     + G +++
    K11G12.5   138 ----------------RRNYKHALDGLVRITREEGFM---KMFNGATMAT 168

                   lrvapygaaiyFgtYEqlKklllkkkge<-*
                    r++   +  ++++Y+q+K+ l++++
    K11G12.5   169 SRAILM-TIGQLSFYDQIKQTLISSGVA    195

mito_carr: domain 3 of 3, from 198 to 288: score 86.4, E = 3.1e-22
                   *->sflksllaGgiAGaiaatvtyPlDvvKtRLQtqgssslskssvnsdv
                      ++ ++++++  A+ +a+++t+PlDv KtR+++   +
    K11G12.5   198    NLQTHFASSISAASVATVMTQPLDVMKTRMMNAAPG----------- 233

                   gksksyrsakksnasasrkYkgildcfkkivkeEGliktrgLYkGlgpnl
                                     ++kgildcf+ + k  G++   g++kG++p++
    K11G12.5   234 ------------------EFKGILDCFMFTAK-LGPM---GFFKGFIPAW 261

                   lrvapygaaiyFgtYEqlKklllkkkge<-*
                   +r ap ++ ++F ++Eql+  ++   +
    K11G12.5   262 ARLAP-HTVLTFIFFEQLRLKFGYAPPV    288



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