Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/K11H3.1a
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Query: K11H3.1a CE31850 Glycerol-3-phosphate dehydrogenase status:Confirmed SW:P34517
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
NAD_Gly3P_dh NAD-dependent glycerol-3-phosphate dehy 655.3 3.2e-193 1
HHH Helix-hairpin-helix motif 8.8 1.1 1
Octopine_DH_N NAD/NADP octopine/nopaline dehydrogenas 7.7 0.52 1
3HCDH_N 3-hydroxyacyl-CoA dehydrogenase, NAD bi 7.7 0.4 1
ldh lactate/malate dehydrogenase, NAD bindi 6.5 2 1
STAS STAS domain 6.4 1.3 1
P5CR Delta 1-pyrroline-5-carboxylate reducta 5.4 1.8 1
Acetylald_DH Acetaldehyde dehydrogenase 4.1 3.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Acetylald_DH 1/1 21 35 .. 1 15 [. 4.1 3.9
3HCDH_N 1/1 20 39 .. 1 20 [. 7.7 0.4
ldh 1/1 21 39 .. 1 20 [. 6.5 2
Octopine_DH_N 1/1 23 39 .. 1 17 [. 7.7 0.52
P5CR 1/1 24 40 .. 1 20 [. 5.4 1.8
HHH 1/1 125 154 .. 1 30 [] 8.8 1.1
STAS 1/1 326 350 .. 89 116 .] 6.4 1.3
NAD_Gly3P_dh 1/1 23 364 .. 1 364 [] 655.3 3.2e-193
Alignments of top-scoring domains:
Acetylald_DH: domain 1 of 1, from 21 to 35: score 4.1, E = 3.9
*->tkKlKvAIiGsGNIG<-*
++ Kv IiGsGN G
K11H3.1a 21 MSPKKVTIIGSGNWG 35
3HCDH_N: domain 1 of 1, from 20 to 39: score 7.7, E = 0.4
*->akdvkqVaViGaGlMGsGIA<-*
+ +k+V++iG+G Gs IA
K11H3.1a 20 TMSPKKVTIIGSGNWGSAIA 39
ldh: domain 1 of 1, from 21 to 39: score 6.5, E = 2
*->kkptKVaVvGAGGgVGsslA<-*
+ p KV+++G G + Gs+ A
K11H3.1a 21 MSPKKVTIIGSG-NWGSAIA 39
Octopine_DH_N: domain 1 of 1, from 23 to 39: score 7.7, E = 0.52
*->mltVgvLGaGnagtalA<-*
+++V ++G+Gn g a A
K11H3.1a 23 PKKVTIIGSGNWGSAIA 39
P5CR: domain 1 of 1, from 24 to 40: score 5.4, E = 1.8
*->mkiGFIGaGnMaeayNdile<-*
+k+++IG Gn + a i++
K11H3.1a 24 KKVTIIGSGNWGSA---IAR 40
HHH: domain 1 of 1, from 125 to 154: score 8.8, E = 1.1
*->tleglkpasreeLlalpGVGpktAeaIlsy<-*
+l g +pa++ + ++GV+ ++++ ++++
K11H3.1a 125 KLVGKIPADTQAISLIKGVSTEKRGGLKLI 154
STAS: domain 1 of 1, from 326 to 350: score 6.4, E = 1.3
*->pevrrtleltGlddligkekifptvaeA<-*
+ev+ ++++tGld ++ ++f v+
K11H3.1a 326 EEVYLMMHKTGLDAKF---PLFTAVHKI 350
NAD_Gly3P_dh: domain 1 of 1, from 23 to 364: score 655.3, E = 3.2e-193
*->pkkvtVlGaGaWGTAlAkvLaeNgeal.deFdpeVrmWvreedlaeq
pkkvt++G+G+WG+A+A +++ +++++deFdp+VrmWv+ee ++++
K11H3.1a 23 PKKVTIIGSGNWGSAIARIVGSTTKSFpDEFDPTVRMWVFEEIVNGE 69
eteKLTEvINetheNvkYLPGvkLPpnlvAtpDleeAlkgAdiiVfvVPs
KL+EvIN++heN kYLPG++LP n+vA++Dl+e+++g++++VfvVP+
K11H3.1a 70 ---KLSEVINNRHENIKYLPGKVLPNNVVAVTDLVESCEGSNVLVFVVPH 116
qflrevleqlkgllkpkavkPilvsliKGiEvgtggvvqliSeiieevLg
qf+++++e+l+g++ ++++ ++sliKG+ +++ g+++liSe i+e+L+
K11H3.1a 117 QFVKGICEKLVGKIPADTQ---AISLIKGVSTEKRGGLKLISEEIKEILK 163
ipvsrelavLsGPNiAsEVAqgmpcettiayskder.aAkelqalfstpp
i vs vL+G+N+A+EVA+ ++ce+ti+ +k +++++++l++lf+t +
K11H3.1a 164 IEVS----VLMGANLAPEVANDNFCEATIG-CKRKAeDGPLLKKLFHT-D 207
yFrVyvneDvvGvEigGALKNViAIAaGivDGLglrnveGdNaKAalitr
+Fr++v+eD ++vE++GALKNV+A+AaG++DGLg+ GdN+KAa+i++
K11H3.1a 208 NFRINVVEDAHTVELCGALKNVVACAAGFTDGLGY----GDNTKAAVIRL 253
GLaEmirlgaalGggsskpeTffglaGlGDLitTCtselsRNrrvGeaLg
GL+E++++++++++g s+++Tff+++G++DLitTC++ +RNr+v+ea++
K11H3.1a 254 GLMETTKFVEHYYPG-SNLQTFFESCGIADLITTCYG--GRNRKVCEAFV 300
kggilesflIieelEkeelnGqvaEGvkTakevyelakkkglvvdmPlte
k+g +s ++e+Eke+lnGq+a+G+ Ta+evy +++k gl++++Pl++
K11H3.1a 301 KTG--KS---MAEVEKELLNGQSAQGPLTAEEVYLMMHKTGLDAKFPLFT 345
aVYrilyeglkveeaieeL<-*
aV++i+ +++k+ e++++L
K11H3.1a 346 AVHKICAGEMKPAELVDCL 364