Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/K12B6.1
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Query: K12B6.1 CE12164 status:Partially_confirmed TR:O16386 protein_id:AAB65916.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Piwi Piwi domain 432.9 2.8e-126 1
PAZ PAZ domain 157.5 4.7e-44 1
DUF701 Putative zinc binding domain (DUF701) 7.3 2.2 1
LysR_substrate LysR substrate binding domain 5.7 2.5 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF701 1/1 164 181 .. 47 64 .] 7.3 2.2
PAZ 1/1 274 413 .. 1 161 [] 157.5 4.7e-44
LysR_substrate 1/1 432 453 .. 1 22 [. 5.7 2.5
Piwi 1/1 548 847 .. 1 341 [] 432.9 2.8e-126
Alignments of top-scoring domains:
DUF701: domain 1 of 1, from 164 to 181: score 7.3, E = 2.2
*->RvgesfqtninpLsepiD<-*
+v+esfqt++n + + ++
K12B6.1 164 KVQESFQTTTNDVAKSVN 181
PAZ: domain 1 of 1, from 274 to 413: score 157.5, E = 4.7e-44
*->lpvlelledyltertsiklsdrdrkkvkealkGlkVetthrnnkglq
+++l++++dy+++ s+k +++ k+k a++Gl+++tth+++++++
K12B6.1 274 CSLLKVFMDYRGFNGSLKANSPFVLKNKNAFIGLWCYTTHGKCSDWK 320
eaprkykiaglssnpaplskFplkdnnGneegkeitvaeYFkekYnirLk
+++ ++ki+++ ++++ ++F++++ k+i+v+ YF+ kYn++Lk
K12B6.1 321 DDRPMIKIKDFGLSAKE-TTFERDN-------KKISVFNYFQVKYNMTLK 362
ypdlPllvvggrsknlNlLPRfnkrnsqknylPpELcsivpgQrytkklf
ypdl+++v++g++ + ++++P+E++++++ Q++ ++
K12B6.1 363 YPDLFTVVARGKDGK-------------NQHIPVECLDLCNSQTVRTEQM 399
erqtsalikkraqr<-*
+ +++a+++k a+
K12B6.1 400 VGTEQADLIKLAAA 413
LysR_substrate: domain 1 of 1, from 432 to 453: score 5.7, E = 2.5
*->aggprGrLrigasPptfa.ylLp<-*
a++p G +++ga P+++++ +Lp
K12B6.1 432 ASEPKGIISVGA-PESVTgLVLP 453
Piwi: domain 1 of 1, from 548 to 847: score 432.9, E = 2.8e-126
*->livvvlpddnkedlekflydeiKkreltelgipsQcvllktlkkksk
+++++++++++++ + eiK++e+ ++++Q+++++t++k +
K12B6.1 548 QLIMFITKSMNNY-----HTEIKCLEQEF-DLLTQDIRFETAVKLAQ 588
qGgrltltNvilkanmKlGGlNyklniekeprckVCNemrviplkptlii
q ++t++N+i+k+nmKlGGlNy l + +++ ++++lii
K12B6.1 589 Q--QNTRKNIIYKTNMKLGGLNYELRSGVFS------------NSKRLII 624
GfDvshppaRTkfDrenggrlnnpsvagvvasmdsphgtkfrgdvrlqpa
Gf++s++ gg ++ p+++g++a+m+s h+++f+g+++++++
K12B6.1 625 GFETSQR----------GGLGDAPIAIGFAANMMS-HSQQFAGGYMFVKK 663
gqElltdlkkgiiresLrsfykntrkkkPkrIivYRDGvSEGqfsqvlny
+++ +++++++i++ L+++++n+++ +P+ +++Y++GvSEGq++ v++y
K12B6.1 664 SADNYGPVIPEILLTILKQAKANRPNDRPDELLIYFSGVSEGQHALVNEY 713
EvnqikeackklsesyqeqePkltvIvvqKrHhtRfFasdksdggskaka
+ nq+k+ac ++es++ P++t+I ++K H+tR+++s++++g
K12B6.1 714 YANQVKAACGLFNESFR---PHITLILASKVHNTRVYKSENGGG-----V 755
qNvpPGTvVDdkitspeyydFylcsqagrqGTvkPthYtVlyDdigeyyl
+Nv+PGTv+D++i+sp+ ++y+++ ++rqGT+k ++Y ++++++ ++
K12B6.1 756 CNVEPGTVIDHTIVSPVLSEWYHAGSLARQGTSKLVKYSLIFNTKK--NE 803
sadelqdLTykLCymyqrvtrpvslPaPvyYAhllAkrgrnnlk<-*
+ +++++LT+ LCy +q+v++p+slP P+++A +++rg ++l+
K12B6.1 804 KLSVYERLTNELCYEMQIVFHPTSLPIPLHIAGTYSERGSQMLA 847