hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/M01D7.4
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  M01D7.4  CE26379   galactokinase status:Partially_confirmed TR:O01969 protein_id:AAK84629.1

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N
--------     -----------                                -----    ------- ---
GHMP_kinases GHMP kinases putative ATP-binding protei   342.1    6.2e-99   1
DUF175       Uncharacterized BCR, YceG family COG1559     3.3        3.1   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
DUF175         1/1     242   295 ..   109   180 ..     3.3      3.1
GHMP_kinases   1/1      20   442 ..     1   391 []   342.1  6.2e-99

Alignments of top-scoring domains:
DUF175: domain 1 of 1, from 242 to 295: score 3.3, E = 3.1
                   *->krLesGksnvqfkVtvpEGytlkdiakkleeetNPGiFALiSRATCV
                      ++L++G++   ++ +v+EG+ + +i+k++ + t  G F L
     M01D7.4   242    TELNKGAT-SHYNERVIEGRIVAQIFKQKFNIT-SGSFRL------- 279

                   DLDGviskvqvaetlddksrseqlk<-*
                       +      ++tl+ ks+ e+lk
     M01D7.4   280 ----KE-----IQTLSGKSFKEILK    295

GHMP_kinases: domain 1 of 1, from 20 to 442: score 342.1, E = 6.2e-99
                   *->mvrvraPgrinliGehfdvnGggvlalaidlgvtvavdelddgkvld
                      +vrv+ Pgr+nliGeh+d++++gv+++aid  +t++++++d+    +
     M01D7.4    20    EVRVTCPGRVNLIGEHIDYHDYGVFPMAIDAATTILAAKNDT----N 62

                   sivttrlysesfeleivilgsldegvpadedyqakqaWaNlvkraaravl
                   siv+ +++s    +  +++++  ++ +  ++    ++W++++++++r ++
     M01D7.4    63 SIVFSNFDS----KYESWSSPIPCPWKGCTS----PKWFDYLLCGWRGIM 104

                   kylgekkggilkgvkieiesniPlgsGLGSSAAlavAlllAlnelfg...
                   ++ +   g++++g+++++++ iP++sGL+SS++l++A +lA+++l  +++
     M01D7.4   105 NRED---GQEQFGMSFLLYGTIPPSSGLSSSSSLVCASALATLSLIVdnd 151

                   ...............pleklpLarea...........velelaGapsGhm
                   + ++ ++  ++++++ +e +++a++++ +++  +   + + l+G+ sG+m
     M01D7.4   152 pfehisrilgpkknsLFEMAEFAKLGhfgkdfahlciESEPLIGTLSGGM 201

                   DnaasayGGglvalggderptlkyepvplp.glsivItNtn.vkrelA.s
                   D+aa ++  +++al++d++ +l++++++lp+++++v++++n++ ++ A+s
     M01D7.4   202 DQAAEVLASEGTALRIDFN-PLRSKNIQLPsDAVFVVVHSNtELNKGAtS 250

                   eYNeRvveceialkvpgs.........................lkallai
                   +YNeRv e +i++++++++ + ++++ + ++ ++ ++++ ++ lk++ ++
     M01D7.4   251 HYNERVIEGRIVAQIFKQkfnitsgsfrlkeiqtlsgksfkeiLKIVEEL 300

                   peeels.........staearrvlpt......kllrradhvvnearrvll
                   p+e  +++  +  + ++ e ++++ t++ ++ kl++ra+hv++ea rv++
     M01D7.4   301 PDEVNKeqvidligaDKLEECLTENTrsfqkfKLRPRARHVFSEAYRVEQ 350

                   aeallegdfdlealgelmnashaslrddyepsylcpeldelvqaalgaaG
                   +e +++++ +++++g+lmn+sh s++ dye+s  c+elde+++   +++G
     M01D7.4   351 FESACAQK-NIQEMGRLMNESHRSCAIDYECS--CRELDEICRLY-LDHG 396

                   alGGgArlsGaGpggcaialvepGtdnveekaealaeevedvyeellggk
                   alG  Arl+GaG+ggca++l               a++v +v  el +
     M01D7.4   397 ALG--ARLTGAGWGGCAVVLMA-------------ADDVDRVVAELPS-- 429

                   grvivtkagneGarvl<-*
                     ++v+k+++ G r+
     M01D7.4   430 --LFVSKPAQ-GIRLQ    442

[DB home][top]