hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/M03C11.1
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Query:  M03C11.1  CE03492   cAMP-dependant protein kinase status:Partially_confirmed TR:Q21483 protein_id:CAA88953.1

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
pkinase       Protein kinase domain                     283.1    3.7e-81   1
Glyco_hydro_2 Glycosyl hydrolases family 2, immunoglo     3.1          5   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
Glyco_hydro_2   1/1     165   181 ..     1    17 [.     3.1        5
pkinase         1/1      28   288 ..     1   294 []   283.1  3.7e-81

Alignments of top-scoring domains:
Glyco_hydro_2: domain 1 of 1, from 165 to 181: score 3.1, E = 5
                   *->thIeDitVtTdlddddy<-*
                      +h++D+ ++T l+dd++
    M03C11.1   165    AHLTDLNLATQLEDDQL    181

pkinase: domain 1 of 1, from 28 to 288: score 283.1, E = 3.7e-81
                   *->yelleklGeGsfGkVykakhkdktgkiVAvKilkkekesikek....
                      + +++ +G+G+fGkV  ++++ kt+k +A+K ++  k++  ek+
    M03C11.1    28    FSVIRSIGRGAFGKVCIVQER-KTKKYFALKYMN--KRRCIEKgvaa 71

                   rflrEiqilkrLsHpNIvrligvfedtddhlylvmEymegGdLfdylrrn
                   +++rE+ +l ++sHp+Iv+l+++f+ ++d++y+v +++ gGdL+ +l+++
    M03C11.1    72 NVIRELTLLSKMSHPFIVNLWYTFQ-DGDYMYMVSDLLLGGDLRYHLSQQ 120

                   ggplsekeakkialQilrGleYLHsngivHRDLKpeNILldendgtvKia
                   g ++ e+ ak +  +i+ ++eYLH+++ivHRD+KpeNILlde+ g+  ++
    M03C11.1   121 G-KFAEDRAKLYLCEICLAVEYLHEMKIVHRDIKPENILLDEQ-GHAHLT 168

                   DFGLArllesssklttfvGTpwYmmAPEvi...leg.rgysskvDvWSlG
                   D  LA++le+++ +t++ GT++Ym APE++ + le ++gy+s+vD+W+lG
    M03C11.1   169 DLNLATQLEDDQLATSYSGTRPYM-APEIYatyLEIeDGYDSRVDWWALG 217

                   viLyElltggplfpgadlpaftggdevdqliifvlklPfsdelpktridp
                   v +yE+l g                          ++Pf+ +    +  +
    M03C11.1   218 VCFYEMLRG--------------------------RTPFEFS----SRTK 237

                   leelfriikrpglrlplpsncSeelkdLlkkcLnkDPskRpGsatakeil
                    ee +   ++    +p p +++ +l+++++++L++D +kR+     ++i+
    M03C11.1   238 PEEAYVAFRE--SSIPYPAHWPTDLIQFINSMLKFDKEKRL--VGLEAIK 283

                   nhpwf<-*
                   +h +
    M03C11.1   284 KHSYT    288

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