hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/M03F4.6
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Query:  M03F4.6  CE28621    status:Partially_confirmed TR:Q23015 protein_id:AAB04576.2

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
EB              EB module                                48.1      3e-11   5
Bowman-Birk_leg Bowman-Birk serine protease inhibitor     6.4        4.1   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
EB                1/5      26    63 ..    12    60 ..    27.7  9.5e-06
EB                2/5      92   109 ..    42    63 .]     4.0       24
EB                3/5     113   167 ..     1    63 []     8.1      1.9
Bowman-Birk_leg   1/1     161   171 ..    57    67 .]     6.4      4.1
EB                4/5     277   321 ..     8    61 ..    13.2    0.077
EB                5/5     331   381 ..     1    62 [.    24.4  7.4e-05

Alignments of top-scoring domains:
EB: domain 1 of 5, from 26 to 63: score 27.7, E = 9.5e-06
                   *->CvakelnkvnpGesgCeaseQCqggwpgSvCingmCeCpegvpkttr
                      C     +++++G+ +C ++e+C g+  +SvC+n++C+Cp++   +++
     M03F4.6    26    C-----AQKLIGS-DCLFDEECYGM--NSVCRNSRCTCPTN---FEE 61

                   vn<-*
                    +
     M03F4.6    62 YD    63

EB: domain 2 of 5, from 92 to 109: score 4.0, E = 24
                   *->CingmCeCpegvpkttrvngvC<-*
                      C++g+CeC  g     +v+g+C
     M03F4.6    92    CRDGKCECWGG----SIVDGKC    109

EB: domain 3 of 5, from 113 to 167: score 8.1, E = 1.9
                   *->ClsgqVlingqCvakelnkvnpGesgCeaseQCqggwpgSvCingmC
                      C+ gq l++ +C     ++v+  +  Ce + QC+    +  Ci g+C
     M03F4.6   113    CPVGQQLYGVEC-----TRVAHYQQPCEKDSQCVDP--FNACIAGTC 152

                   eCpegvpkttrv..ngvC<-*
                    C +g   ttr++++g+C
     M03F4.6   153 LCAPG---TTRDteRGFC    167

Bowman-Birk_leg: domain 1 of 1, from 161 to 171: score 6.4, E = 4.1
                   *->DttdGfCyppC<-*
                      Dt +GfC+ +C
     M03F4.6   161    DTERGFCHATC    171

EB: domain 4 of 5, from 277 to 321: score 13.2, E = 0.077
                   *->ingqCvakelnkvnpGesgCeaseQCqggwpgSvCingmCeCpegvp
                      +ngqC    l  +  G+  C+ ++QC+gg  +S C  g C+C+ g
     M03F4.6   277    VNGQC----LSIAHRGD-PCQIDQQCEGGITMS-CTLGSCQCKLG-- 315

                   kttrvng<-*
                    +++ n+
     M03F4.6   316 -YHENND    321

EB: domain 5 of 5, from 331 to 381: score 24.4, E = 7.4e-05
                   *->ClsgqVlingqCvakelnkvnpGesgCeaseQCqggwpgSvCingmC
                      C+   V+ n++C    l+kv +G   C ++ QC+     + C+ g+C
     M03F4.6   331    CTLEEVASNDRC----LAKVQLGA-RCYSNKQCIQS---AECRFGTC 369

                   eCpegvpkttrvngv<-*
                   +C  g   +++v+++
     M03F4.6   370 QCRCG---YKQVKDQ    381

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