Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/M04B2.2
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Query: M04B2.2 CE12386 status:Partially_confirmed TR:Q21503 protein_id:CAB01236.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
THUMP THUMP domain 72.1 6.8e-19 1
UPF0020 Putative RNA methylase family UPF0020 49.0 1.4e-13 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
THUMP 1/1 100 198 .. 1 97 [] 72.1 6.8e-19
UPF0020 1/1 206 312 .] 1 153 [. 49.0 1.4e-13
Alignments of top-scoring domains:
THUMP: domain 1 of 1, from 100 to 198: score 72.1, E = 6.8e-19
*->rvipveaeceadledilkaakeiikekffee....gktFaVrtkrrg
++ ++ ++ + e+ilk ++++ k+++ e +++ ++F+V++kr+g
M04B2.2 100 YQLARGNAINGGSEKILKQIQQFKKDRIYSEvtddSPKFRVTCKRCG 146
keiknheftsleinrevGgailertgrlkVdLenPDivvhvEiikdkayi
e++ h+f+s++ + ++G+ i++++g +k++++++Di+v + i+++++ +
M04B2.2 147 -EKEIHKFSSMDAASKFGAEINNAFG-WKCSVKEFDIEVVLRIDRNNMTV 194
sidr<-*
++++
M04B2.2 195 MMAL 198
UPF0020: domain 1 of 1, from 206 to 312: score 49.0, E = 1.4e-13
*->RgyRpfngpapLkatLArAlvnLagwkpGdpllDPfCGsGTiLIEAA
R++ + p+++++t ++++La+ kpGd+++D +CG G+i+IE+A
M04B2.2 206 RNICAYG-PTTMRSTMCHCMLQLADIKPGDIIVDAMCGGGSIPIEGA 251
LmganvaPGlfRrFgFekWekfdkdlWykllqeaeekanpnkaelkahly
+ n +
M04B2.2 252 ISWKNSL-----------------------------------------FL 260
GsDiDrrmvrgAkiNaeaagvgdk..iefvqadaaklpepllnglNvlsv
G D+ + ++ N +a+ +++ +f ++da++lp l++ +s+
M04B2.2 261 GGDNHEMAMSRCLQNWSANSSSSRsnCDFLTWDATNLP---LRD---NSI 304
DvIvtdPP<-*
D+ vtd+P
M04B2.2 305 DALVTDLP 312