Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/M04F3.3
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Query: M04F3.3 CE12416 protein kinase status:Partially_confirmed TR:Q95Y99 protein_id:AAK71382.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
pkinase Protein kinase domain 25.4 6e-06 1
glutaredoxin Glutaredoxin 7.6 0.84 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
pkinase 1/1 25 160 .. 64 187 .. 25.4 6e-06
glutaredoxin 1/1 253 290 .. 19 63 .. 7.6 0.84
Alignments of top-scoring domains:
pkinase: domain 1 of 1, from 25 to 160: score 25.4, E = 6e-06
*->igvfed..tddhlylvmEymegGdLfdy..lrrnggplsekeakkia
i+++ d+ +d+ y+vm +++ dL ++ +l++n+ ++ + +++++
M04F3.3 25 IHIYDDgiYKDYRYIVMTLCGP-DLQKIaeLMNNN--FNQDTIIRVC 68
lQilrGleYLHsngivHRDLKpeNILlden..dgtvKiaDFGLArlle..
+l +++ +H+ +HRDLKp N+ +d n++ +v + D G+Ar++ ++
M04F3.3 69 IRTLLAIKTMHEYTYIHRDLKPCNFAVDFNpnSLHVYLFDYGMARKYAtk 118
.........sssklttfvGTpwYmmAPEvilegrgysskvDvWS<-*
+++++ + ++ + +f GT +Y+ + ++++ s+ D WS
M04F3.3 119 dsgnkwqlrRPRNPAQFRGTVRYC-SLNM-HKRKELSRVDDLWS 160
glutaredoxin: domain 1 of 1, from 253 to 290: score 7.6, E = 0.84
*->ellkklkvergdfevveidgeddgseiqdalakltkekeGqrTVP<-
+l+ +l++ +++ e++++dd+s+iq++l+ + G+ +VP
M04F3.3 253 ALVAELGE---TARPKELSRMDDESTIQKYLLASF----GRAGVP 290
*
M04F3.3 - -