hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/M04G12.2
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Query:  M04G12.2  CE12424   cysteine protease status:Confirmed TR:P92005 protein_id:CAB03209.1

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N
--------     -----------                                -----    ------- ---
Peptidase_C1 Papain family cysteine protease            205.4    8.3e-61   1
DUF325       Viral domain of unknown function             2.1        6.2   1
DUF334       Domain of unknown function (DUF334)          0.4        4.4   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
DUF325         1/1      24    33 ..     1    11 [.     2.1      6.2
DUF334         1/1     102   123 ..    49    70 ..     0.4      4.4
Peptidase_C1   1/1     221   459 ..     1   337 []   205.4  8.3e-61

Alignments of top-scoring domains:
DUF325: domain 1 of 1, from 24 to 33: score 2.1, E = 6.2
                   *->lkyaLRLTrEy<-*
                       + a RLTrE+
    M04G12.2    24    -RAAIRLTREF    33

DUF334: domain 1 of 1, from 102 to 123: score 0.4, E = 4.4
                   *->KkQNKLvvKYlaEikEnQdlRE<-*
                      Kk NK vv+Y    k nQ++RE
    M04G12.2   102    KKVNKPVVRYPNIAKNNQKIRE    123

Peptidase_C1: domain 1 of 1, from 221 to 459: score 205.4, E = 8.3e-61
                   *->lPesfDWReWkgga.VtpVKdQGi..qCGSCWAFSavgalEgrycik
                      lP+ +DWR+++g +  +p ++Q+i+  CGSCW F+++gal +r++++
    M04G12.2   221    LPTGWDWRNVSGVNyCSPTRNQHIpvYCGSCWVFGTTGALNDRFNVA 267

                   tgtkawggklvsLSEQqLvDCdgedygnngesCGyGCnGGGlmdnAfeYi
                   ++ ++w    + LS+Q+++DC g   + n       C+G G   n +e+
    M04G12.2   268 RK-GRW--PMTQLSPQEIIDCNG---KGN-------CQG-GEIGNVLEHA 303

                   kkeqIsnNgGlvtEsdYekgCkPYtdfPCgkdggndtyypCpgkaydp.n
                   k       +Glv E++       Y     +++g+++           p +
    M04G12.2   304 KI------QGLVEEGCN-----VYR----ATNGECN-----------PyH 327

                   dTgtCkynckknskypktyakikgygdvpynvsTydEealqkalaknGPv
                   ++g+C  n ++ s  ++t +++k+yg+v+        ++++ ++ k GP+
    M04G12.2   328 RCGSCWPN-ECFSLTNYTRYYVKDYGQVQG------RDKIMSEIKKGGPI 370

                   sVaidasedskgDFqlYksGendvgyGvYkhtsageCggtpfteLdHAVl
                   ++ai a+  ++   + Y +G       vY++  + + ++      +H +
    M04G12.2   371 ACAIGATKKFE---YEYVKG-------VYSE--KSDLES------NHIIS 402

                   iVGYGteneggtfdetssskksesgiqvssgsngssgSSgssgapiedkg
                   + G+G++++g
    M04G12.2   403 LTGWGVDENG---------------------------------------- 412

                   kdYWIVKNSWGtdWGEnGYfriaRgknksg.kneCG..Iaseasypi<-*
                   + YWI +NSWG+ WGE G+fr++  k k+g++ + + +I+ + +y+
    M04G12.2   413 VEYWIARNSWGEAWGELGWFRVVTSKFKDGqGDQYNmgIERDCYYAD    459

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