hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/M05D6.7
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Query:  M05D6.7  CE03505  locus:gbh-2 gamma-butyrobetaine,2-oxoglutarate dioxygenase status:Partially_confirmed TR:Q21526 protein_id:CAA91416.1

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N
--------  -----------                                   -----    ------- ---
Gamma-BBH Gamma-butyrobetaine hydroxylase               658.9   2.7e-194   1
TNF       TNF(Tumor Necrosis Factor) family               4.5        5.3   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
TNF         1/1     161   170 ..   151   161 .]     4.5      5.3
Gamma-BBH   1/1       6   377 ..     1   444 []   658.9 2.7e-194

Alignments of top-scoring domains:
TNF: domain 1 of 1, from 161 to 170: score 4.5, E = 5.3
                   *->lnatfFGlfll<-*
                      ++ tfFG+f++
     M05D6.7   161    HD-TFFGQFWV    170

Gamma-BBH: domain 1 of 1, from 6 to 377: score 658.9, E = 2.7e-194
                   *->slvivkwadgesltfpniWLRDnCpcseCynNVFLRDlshstkarkt
                      +++++k++++++l++p++WLRD+C+++++y+      l+++++++++
     M05D6.7     6    YAMRMKARNPSKLIMPFVWLRDHCTSQKLYH------LPTNQRKSNC 46

                   llidhldkiirvqqviidedgksLqIqWsDgNSTHeSeFpldwLkerdfs
                   ++i++l+ki++++qviide+++sLqI+W+Dg   H+S+F+++++++
     M05D6.7    47 CDITSLSKIKHSNQVIIDEATNSLQIVWIDG---HQSKFKIGNIIR---- 89

                   yqarrrylrenyrppkqlWnkseledvlkdfsyedvNEFiDlksDsaLrq
                    +++++++++n++++++lWn+++l+dv++++           ks+ +L++
     M05D6.7    90 -EGKVEKNVSNDNKIYELWNSKSLKDVPRIS-----------KSTLSLQS 127

                   wLqaLakyGiaflkGaPddasNiKTQElSESNVGDgavekLakRiGfIrr
                   ++++L+kyG+++++G+++++               +a+ekL+++++++++
     M05D6.7   128 FSKNLVKYGVIIVDGVEGTS---------------EATEKLCQSLVPVHD 162

                   TfyGelFeVsN...adkpdaeNtAYtsNteLPlHTDlPyfeypPGlQiLH
                   Tf+G+++++sN+ ++d+p++e+tAY+s +e+++HTD++yf+++PG+Q++H
     M05D6.7   163 TFFGQFWVFSNsatNDEPAYEDTAYGS-DEIGPHTDGTYFDQTPGIQVFH 211

                   cLvqsespDPNTGGenlfVDGFyVAekLReedPEaFeiLcsvpVdyryig
                   cL+++++     GG++++VD+Fy+AekLR+e+PE+FeiLc+++++++y++
     M05D6.7   212 CLTPAKT-----GGDTVLVDSFYCAEKLRNESPEDFEILCNTKISHHYLE 256

                   gdgdyyqsKplkefhviwrapvIeLDyseGrivrInfnppdRapFeyGiY
                   g+++++     ++++v++++pvIe++ s+G+i++I+fnp+dRapF++
     M05D6.7   257 GSPPGS-----SIHSVSLEKPVIERN-SFGNITQIRFNPYDRAPFSC--- 297

                   DKPSDLNNNLDLNLiilnafdvpaaevkpFYrAyklFvslandpqnqfef
                                   ln+++++aae+++FY+Ay++F++++++p+n++e+
     M05D6.7   298 ----------------LNSSEASAAETIKFYEAYEKFSKICHNPDNSIEI 331

                   KlepGdvvtFDNrRlLHgRtgyddasegqRhlvGcYvDwDifySRlRvLr
                   +l+pG+v+++DN+R+LH+R    ++++g+R+++GcY+++D+f+++++++
     M05D6.7   332 SLRPGSVIFIDNFRILHSR----TSFQGYRQMCGCYLSRDNFMAKAIPFL 377

                   <-*

     M05D6.7     -     -

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