Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/M106.1
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Query: M106.1 CE18083 locus:mix-1 mitotic chromosome and X-chromosome associated MIX-1 protein status:Confirmed SW:Q09591 protein_id:CAA8705
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
SMC_N RecF/RecN/SMC N terminal domain 166.7 2.9e-46 1
SMC_C SMC family, C-terminal domain 88.6 3.1e-25 2
ABC_tran ABC transporter 16.7 0.0011 2
DUF16 Protein of unknown function DUF16 7.2 0.75 1
resolvase Resolvase, N terminal domain 4.9 3 1
FlpD Methyl-viologen-reducing hydrogenase, 4.3 2.7 1
Ribosomal_S6e Ribosomal protein S6e 3.5 7.2 1
AdoHcyase S-adenosyl-L-homocysteine hydrolase 3.1 1.7 1
Methionine_synt Methionine synthase, vitamin-B12 inde 1.6 8.8 1
G6PD Glucose-6-phosphate dehydrogenase, NA 1.5 3.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
ABC_tran 1/2 29 39 .. 5 15 .. 2.4 15
SMC_N 1/1 1 172 [. 1 330 [] 166.7 2.9e-46
Methionine_synt 1/1 216 224 .. 341 349 .] 1.6 8.8
FlpD 1/1 210 228 .. 111 127 .] 4.3 2.7
G6PD 1/1 312 317 .. 191 196 .] 1.5 3.6
DUF16 1/1 295 335 .. 58 99 .. 7.2 0.75
resolvase 1/1 412 424 .. 143 155 .] 4.9 3
AdoHcyase 1/1 480 513 .. 276 309 .] 3.1 1.7
Ribosomal_S6e 1/1 977 990 .. 127 140 .] 3.5 7.2
SMC_C 1/2 1009 1060 .. 28 79 .. -2.1 2.8e+02
ABC_tran 2/2 1086 1142 .. 108 162 .. 14.0 0.0067
SMC_C 2/2 1100 1171 .. 120 192 .. 88.9 2.6e-25
Alignments of top-scoring domains:
ABC_tran: domain 1 of 2, from 29 to 39: score 2.4, E = 15
*->alvGpNGaGKS<-*
a++G NG+GKS
M106.1 29 AITGYNGSGKS 39
SMC_N: domain 1 of 1, from 1 to 172: score 166.7, E = 2.9e-46
*->mylkrielegFKSYagktvigpFspgFtaIvGPNGSGKSNilDAIlF
m++k i l+gFKSY + t i++Fsp F+aI+G NGSGKSNilD+I+F
M106.1 1 MHIKSIHLDGFKSYQKHTDILDFSPTFNAITGYNGSGKSNILDSICF 47
VLGegrsakkLRaerlsdLIhkgsggkppanksAeVtitFdnedkenise
+G+ + ++Ra++++ LI +g+ +A V + Fdn dk+ ++
M106.1 48 IMGI-NKLDNIRAKSMHELISHGGT-------KAIVQVRFDNTDKRCSP- 88
lgqhirdgpldeenpevtItRrvyrlglgdGstSeYyiWknlrlNgkrvt
+ e+ +e+ + R + +g G +Y + Ng+ +t
M106.1 89 --------FGMEHLDEIVVQRIITAQATGKGCATSYTL------NGHAAT 124
klkevqelLesagIdiElatLangvskyRayaWCFHWDkELiLleqIswR
q++++ +g+++
M106.1 125 N-GKMQDFFRGVGLNV---------------------------------- 139
aeYeaLapeiETCqlFLPElLtvSFqrGWeKetdYaEvLarnFERDkqLg
M106.1 - -------------------------------------------------- -
YTqGPqKADLRlRAnGlPVEDvLSRGQLKLknpyfiilQGeyltrekgrh
+np+f+i+QG+
M106.1 140 ------------------------------NNPHFLIMQGR--------- 150
ClYLvedIasmkPkeRreldeGLlellEEisGt<-*
++ +++mkP+e++ + EE++Gt
M106.1 151 ----ITTVLNMKPEEIL-------GMVEEAAGT 172
Methionine_synt: domain 1 of 1, from 216 to 224: score 1.6, E = 8.8
*->kNMVeAAkl<-*
kNMVe+++l
M106.1 216 KNMVEVTRL 224
FlpD: domain 1 of 1, from 210 to 228: score 4.3, E = 2.7
*->KftetvkeFve..rikkLG<-*
Kf e+ k++ve +r+kkL+
M106.1 210 KFREDRKNMVEvtRLKKLK 228
G6PD: domain 1 of 1, from 312 to 317: score 1.5, E = 3.6
*->KEmVQN<-*
KE+V+N
M106.1 312 KETVKN 317
DUF16: domain 1 of 1, from 295 to 335: score 7.2, E = 0.75
*->Etklaqlfelqkl.vlaQGeqIrkqLtqkVekeikiQGEqIke<-*
E l+ ++ l k++++ Q e +++qL+++ k +k++GEqI++
M106.1 295 EAALS-AAHLSKQsIMLQKETVKNQLVETINK-LKKEGEQINK 335
resolvase: domain 1 of 1, from 412 to 424: score 4.9, E = 3
*->reGlkaAKarGry<-*
++G+ aAK+rG++
M106.1 412 SSGITAAKKRGER 424
AdoHcyase: domain 1 of 1, from 480 to 513: score 3.1, E = 1.7
RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
*->hLkklgvkltkLteeqaeylgvpkeGpfksdhYR<-*
h +kl ++tkL++ + l+ k+G + ++ R
M106.1 480 HAAKLHESITKLKDMDTRLLNSYKDGRYALNYQR 513
Ribosomal_S6e: domain 1 of 1, from 977 to 990: score 3.5, E = 7.2
*->vkkGekdIpgLtdd<-*
v kG ++I +Ltd+
M106.1 977 VSKGKDEIKELTDK 990
SMC_C: domain 1 of 2, from 1009 to 1060: score -2.1, E = 2.8e+02
*->veeRyeelvekledleeerkkllevieeldkkrleeFmeaFnkInkn
+e+ ++++k+e+++e+ + l++ i ldkk+ +e a + +nk
M106.1 1009 CEAKVLDIKNKRERITEDFNMLKKTIATLDKKKVDELIRAHESVNKD 1055
fkevF<-*
f ++F
M106.1 1056 FGQIF 1060
[output cut off at A = 10 top alignments]