hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/M106.5
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Query:  M106.5  CE01608  locus:cap-2 F-actin capping protein beta subunit status:Confirmed SW:P34686 protein_id:CAA87051.1

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
F_actin_cap_B F-actin capping protein, beta subunit     745.3   2.6e-220   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
F_actin_cap_B   1/1       1   268 [.     1   294 []   745.3 2.6e-220

Alignments of top-scoring domains:
F_actin_cap_B: domain 1 of 1, from 1 to 268: score 745.3, E = 2.6e-220
                   *->MseqQLDCALDLmRRLPPqqiekNLadLIDLvPdLaeDLLSSvDqPL
                      M+eqQLDCALDLmRRLPPq+++kNL+dLIDL+P+L++DLLS++DqPL
      M106.5     1    MGEQQLDCALDLMRRLPPQHCDKNLTDLIDLCPHLVDDLLSTIDQPL 47

                   kiakDsaesgKdYLLCDYNRDgDSYRSPWSNtYdPPLePkDLqDgqlPSa
                   kia+D +e+gK+YLLCDYNRDgDSYRSPWSNtYdPPLe     DgqlPS+
      M106.5    48 KIAAD-RETGKQYLLCDYNRDGDSYRSPWSNTYDPPLE-----DGQLPSE 91

                   kLRklEieANeaFdvYRdLYfEGGVSSVYlWDLDegdfnGhDFAgVVLiK
                   k+Rk+EieAN+aF++YRdLYfEGGVSSVY+WDLD+g+     FAg+VLiK
      M106.5    92 KRRKMEIEANAAFESYRDLYFEGGVSSVYFWDLDNGG-----FAGIVLIK 136

                   KagDgskkGqPirGcWDSIHVvEVtekkssgrtahYKLTSTimLwLqtnK
                   K+gDg+k+   i+GcWDSIHV+E+te+   +r+ahYKLTSTimLwLqtnK
      M106.5   137 KEGDGAKN---ITGCWDSIHVIEITER---ARQAHYKLTSTIMLWLQTNK 180

                   tdqsGtmnLgGSLTRQtEkDatinesrPLDvifstHiANiGklvEDmEsK
                   ++ sG+mnLgGSLTRQ+E+Da+in++       +tH+AN+G+++ED+EsK
      M106.5   181 SS-SGVMNLGGSLTRQHEMDAPINDQ-------NTHLANMGRMIEDQESK 222

                   mRntLeeIYFGKTKdivngLRsaekaselekqnkdlqreliralqnr<-*
                   mR+t++eIYFGKTK+++++LRs+ek+selekq ++++rel++a++nr
      M106.5   223 MRLTINEIYFGKTKKVMSDLRSTEKQSELEKQ-DEIVRELNNAMANR    268

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