Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/M110.4
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Query: M110.4 CE02277 eukaryotic initiation factor status:Partially_confirmed TR:Q21531 protein_id:CAA90261.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
MIF4G MIF4G domain 200.6 1.2e-57 1
SlyX SlyX 2.4 1.5 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
SlyX 1/1 365 373 .. 1 9 [. 2.4 1.5
MIF4G 1/1 518 748 .. 1 230 [] 200.6 1.2e-57
Alignments of top-scoring domains:
SlyX: domain 1 of 1, from 365 to 373: score 2.4, E = 1.5
*->eLeaRleeL<-*
+Le R+eeL
M110.4 365 ALEKRIEEL 373
MIF4G: domain 1 of 1, from 518 to 748: score 200.6, E = 1.2e-57
*->ekkvkgllnkLsespenfekiikellkllmsdlrenDPennkellke
+kkv++l+nk++ p++ ++ +e++++++s+ n+++l++
M110.4 518 CKKVRSLMNKVT--PTSQRPLTEEFISYNVSS--------NDAQLAQ 554
lielifekaveepnfipayArLcalLnsknp.....kteFgklllnrlqe
++e++f+kaveep+f+ +yA++c + + + +++++k+ F+ ++l+r+q+
M110.4 555 VVEIVFDKAVEEPKFCALYAEMCKAQANHELsqtggKSAFRNKVLTRTQM 604
eFekr..................eleaeleeeeesdrrrrlglvrFlgEL
F+ +++ + ++ ++++++ ++e++l+ee++++rrr+ g+++F+g+L
M110.4 605 TFQDKkdidadklaiiekeedpvKKELMLAEEKQKFRRRKFGVMTFMGYL 654
ynfqvltekiileclkelledlteedlqdqvrdeeslecllslLetiGkd
y +q+l++ki++ c +el+++ +++d +++++dees++c l+l+et+G +
M110.4 655 YRNQLLSTKIVQTCTFELFNSIKDQDIKKEDVDEESIHCGLQLIETVGVM 704
Len.sekspklmdellerlqdillkrdkkhvrvesepelssrirfmledl
L++++++++ ++d+++++l++++ +s++irfm+++l
M110.4 705 LDKsKDSTTVFLDQWFQKLEAAKPY-------------CSNKIRFMIMNL 741
ielrknk<-*
+elrk+k
M110.4 742 MELRKDK 748