Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/M110.5c
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Query: M110.5c CE23878 status:Confirmed TR:Q9U3A6
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PID Phosphotyrosine interaction domain (PTB/PID) 77.4 1.2e-20 1
Fic Fic protein family 5.4 5.3 1
PTPS 6-pyruvoyl tetrahydropterin synthase 1.8 7.5 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PTPS 1/1 33 41 .. 136 144 .] 1.8 7.5
PID 1/1 38 162 .. 1 164 [] 77.4 1.2e-20
Fic 1/1 148 207 .. 1 51 [. 5.4 5.3
Alignments of top-scoring domains:
PTPS: domain 1 of 1, from 33 to 41: score 1.8, E = 7.5
*->kNIviYrGe<-*
+N+++Y+G
M110.5c 33 NNGISYKGK 41
PID: domain 1 of 1, from 38 to 162: score 77.4, E = 1.2e-20
*->FeVkYLGsveVpkemrapskstRmqvareairrlreavKkpkakkik
++ k++G +V+k+ +++a++ +++ +++
M110.5c 38 YKGKLIGEQDVDKA------------RGDAMCAEAMR------TAKS 66
rskgssgerqagtkidLsistdglklldekteaekevihehplrkISFiA
++k+ ++t+i+L+i +dg+k+ldek+ ++v+h++p+ +ISFiA
M110.5c 67 IIKAAG---AHKTRITLQINIDGIKVLDEKS---GAVLHNFPVSRISFIA 110
vggDpdVdlraFayvrstddsliaadgatsrfaCHvFecekgkqlAedia
D+ d raF++ + ++++ + F +k++q+A + +
M110.5c 111 R--DSS-DARAFGL--------VYGEPGGK----YKFYGIKTAQAADQAV 145
eavgqAFevaYqeflra<-*
+a+++ F+v+++ +++
M110.5c 146 LAIRDMFQVVFEMKKKQ 162
Fic: domain 1 of 1, from 148 to 207: score 5.4, E = 5.3
*->llelHrilfeddydwaGqfRttqvakv.........gnfvfpppeav
++++ + fe+ ++ + q+++ q+ +++ + +++++g++ ++ +++
M110.5c 148 IRDMFQVVFEMKKKQIEQVKQQQIQDGgaeisskkeGGVAVADLLDL 194
ealldrlfqwlnn<-*
e +l+ ++ ++
M110.5c 195 ESELQQIERGVQQ 207