Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/M28.6
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Query: M28.6 CE02284 esterase status:Confirmed TR:Q21569 protein_id:CAA90128.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
beta-lactamase Beta-lactamase 246.4 3.8e-70 1
PsbN Photosystem II reaction centre N prote 5.7 7.4 1
ApoC-I Apolipoprotein C-I (ApoC-1) 3.8 7.4 1
Gemini_AL1 Geminivirus AL1 protein 1.5 7.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PsbN 1/1 1 20 [. 1 20 [. 5.7 7.4
ApoC-I 1/1 42 55 .. 48 61 .] 3.8 7.4
Gemini_AL1 1/1 165 181 .. 137 153 .. 1.5 7.1
beta-lactamase 1/1 51 419 .. 1 375 [] 246.4 3.8e-70
Alignments of top-scoring domains:
PsbN: domain 1 of 1, from 1 to 20: score 5.7, E = 7.4
*->MEtiAtvltIFlasLLlsiT<-*
M ++++ +Fla Lls+T
M28.6 1 MQQFSLLFKLFLATVLLSVT 20
ApoC-I: domain 1 of 1, from 42 to 55: score 3.8, E = 7.4
*->EaFkKvkeklKttf<-*
E F+Kv+e +K +f
M28.6 42 ERFEKVREVFKKNF 55
Gemini_AL1: domain 1 of 1, from 165 to 181: score 1.5, E = 7.1
*->agsdeealqIikeatsk<-*
a++ e ++qIi+e+ +k
M28.6 165 AADHEKMRQIIEEEEPK 181
beta-lactamase: domain 1 of 1, from 51 to 419: score 246.4, E = 3.8e-70
*->ldrlieelmaddvdggipGvavavvrdGkvvvdagggaaygndcrrG
+++++e++++ i G a+av +dGk vvd++g G
M28.6 51 FKKNFENGWE------IEGSAFAVFVDGKKVVDLWG----------G 81
vadletgrpvtpdTlFriaSvtKtfTAtavlqLveeGksildLDdPVytk
+ad+++ r++ +dT+ +S+tK+ +++av+ L e+Gk l++DdPV
M28.6 82 YADKQAARKWAEDTITVTFSTTKAAASLAVALLYEQGK--LRYDDPV--- 126
dsvyPvtekYlPgFpedslpvvgvppfgpefag.gkgpvTlrhLLtHtsG
s kY+ p f+++g ++vT+ + L+H sG
M28.6 127 -S------KYW-----------------PGFGThGRDNVTINMALSHMSG 152
lpdyapd.le.daady.elvralaalpplypPGtrfgYsNtgyglLLGel
++++ + +e+ aad++++++ ++ ++p+++PGt+ gY+++++g+L++++
M28.6 153 MAWFDTPiTEeIAADHeKMRQIIEEEEPKWAPGTKTGYHAYTFGWLVDQI 202
vervtgkGvqsyeellrerilrPLgmtdtglgppesedprdaagyggag.
v++ +++ + ++++re+i+ d ++g+p se++r+a+ +++
M28.6 203 VRHTDDQK-RGIGQFFREEIATK-LDVDYHIGLPVSEQHRVARISTPNMl 250
pvrv.p.pld........................................
+++ + + + + ++ + ++++ ++ ++++ + ++ + ++++
M28.6 251 NRLDeMwTDVrvvkymkslfklmtdhplshivknpswleavsrctinnpd 300
...........istarDLarflqgllagglallgglllsaa.laqlt.wl
++ +++ ++++ar La ++ ++g+ll +a+l++ ++
M28.6 301 yhrleqaaalgMGNARSLASLF-------DKVNRGKLLNQAtLNTISkPF 343
r.gtt.v.giragygweGlGwvladkggga.pglfgHtGswplgggfgty
++ + ++ + G+G++ + ++++ fgHtG + ++
M28.6 344 VnESDfIfDDTVAK---GHGFFHLPIHRAGtQFGFGHTG------HGCQM 384
lavdPerAVvWPPgaglgvvvltNr.gpnpda.adarlialaaa<-*
++ d ++ +++++++tN+ ++ + ++ +++ l+
M28.6 385 VITDLKN--------RVTIAYVTNGlKT-GLYdLCRTYWGLQTS 419