Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/M57.2
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Query: M57.2 CE19541 status:Partially_confirmed TR:Q9TYY0 protein_id:AAC68985.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PPTA Protein prenyltransferase alpha subunit repe 83.2 1.7e-22 5
LRR Leucine Rich Repeat 10.7 0.36 1
TPR TPR Domain 5.9 7.3 2
DUF233 Odorant binding protein 4.0 9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PPTA 1/5 49 77 .. 3 31 .] 3.6 28
PPTA 2/5 114 135 .. 8 29 .. 10.5 0.27
TPR 1/2 123 136 .. 1 14 [. 1.5 1.3e+02
PPTA 3/5 143 173 .. 1 31 [] 31.2 2.6e-07
PPTA 4/5 178 208 .. 1 31 [] 34.2 3.3e-08
PPTA 5/5 225 252 .. 1 28 [. 15.3 0.011
DUF233 1/1 234 261 .. 26 55 .. 4.0 9
TPR 2/2 377 390 .. 21 34 .] 4.0 25
LRR 1/1 500 521 .. 1 25 [] 10.7 0.36
Alignments of top-scoring domains:
PPTA: domain 1 of 5, from 49 to 77: score 3.6, E = 28
*->LeftselielnpkNYsaWnyRrwvleklg<-*
L +t+ ++e+n+ Y+ Wn Rr +e
M57.2 49 LSLTQAILEKNADIYTFWNIRRTTIELRM 77
PPTA: domain 2 of 5, from 114 to 135: score 10.5, E = 0.27
*->elielnpkNYsaWnyRrwvlek<-*
e+i+ npk YsaW +R w l++
M57.2 114 ECIKSNPKSYSAWYQRAWALQR 135
TPR: domain 1 of 2, from 123 to 136: score 1.5, E = 1.3e+02
*->aeayynlGnaylkl<-*
+ a+y++++a++++
M57.2 123 YSAWYQRAWALQRQ 136
PPTA: domain 3 of 5, from 143 to 173: score 31.2, E = 2.6e-07
*->rELeftselielnpkNYsaWnyRrwvleklg<-*
+EL++++++++l+ +N+++W +Rr v + ++
M57.2 143 KELALCEKALQLDCRNFHCWDHRRIVARMAK 173
PPTA: domain 4 of 5, from 178 to 208: score 34.2, E = 3.3e-08
*->rELeftselielnpkNYsaWnyRrwvleklg<-*
+ELef ++li +n++NYsaW+yR l++++
M57.2 178 EELEFSNKLINDNFSNYSAWHYRSIALKNIH 208
PPTA: domain 5 of 5, from 225 to 252: score 15.3, E = 0.011
*->rELeftselielnpkNYsaWnyRrwvle<-*
+EL+ ++ ++ +++ +saW y rw+le
M57.2 225 SELQKVKNAFFMDAEDQSAWTYTRWLLE 252
DUF233: domain 1 of 1, from 234 to 261: score 4.0, E = 9
*->anitlenyvkarlrikgeveerpdGktYLk<-*
++++ e+ + a+++++ +e++ +Gk++L+
M57.2 234 FFMDAED-QSAWTYTRWLLEVG-SGKEFLR 261
TPR: domain 2 of 2, from 377 to 390: score 4.0, E = 25
*->ieayekALeldPnn<-*
+e++++ +el+P+n
M57.2 377 LEDCKQLIELEPKN 390
LRR: domain 1 of 1, from 500 to 521: score 10.7, E = 0.36
*->nLreLdLsgNnltgslppdafsgLt<-*
nL++L ++ N+++ slpp L+
M57.2 500 NLKSLTINENPIE-SLPP--SPCLS 521