Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/M57.1
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Query: M57.1 CE19540 status:Partially_confirmed TR:Q9TYX9 protein_id:AAC68984.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
SPK Domain of unknown function (DUF545) 609.8 1.6e-179 3
Nop10p Nucleolar RNA-binding protein, Nop10p famil 6.7 2.6 1
WH2 WH2 motif 6.0 8.2 2
ETF_beta Electron transfer flavoprotein beta subunit 3.2 7.2 1
Parvo_NS1 Parvovirus non-structural protein NS1 2.7 5.5 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
ETF_beta 1/1 56 71 .. 37 52 .. 3.2 7.2
SPK 1/3 5 113 .. 1 115 [] 193.5 3.2e-54
SPK 2/3 127 241 .. 1 115 [] 218.8 8.3e-62
Nop10p 1/1 312 325 .. 46 59 .] 6.7 2.6
Parvo_NS1 1/1 307 329 .. 337 364 .] 2.7 5.5
WH2 1/2 332 348 .. 1 18 [. 4.9 17
SPK 3/3 256 366 .. 1 115 [] 212.4 7e-60
WH2 2/2 621 631 .. 1 14 [. 1.1 2.4e+02
Alignments of top-scoring domains:
ETF_beta: domain 1 of 1, from 56 to 71: score 3.2, E = 7.2
*->iINpfDeiAvEEAlrl<-*
++N+f+++++EE +rl
M57.1 56 KMNEFNKYSIEERIRL 71
SPK: domain 1 of 3, from 5 to 113: score 193.5, E = 3.2e-54
*->aeltrfmdFLvekTKdavevkkPlpvatkvfeeFselegsglsesty
elt+fmdFLve+TKd++ Pl va+kvf++F ++ ++ +
M57.1 5 DELTEFMDFLVEQTKDSIY---PL-VAKKVFKKFPNRRLIPE--DKR 45
ykRFhrkLAPnmaklnnYSiEeRvRlMFaLsgkVeddFLerietiGtVeL
y RF+++ AP+m+++n+YSiEeR+RlM+aL+gkVeddFL+ri+ +GtVeL
M57.1 46 YPRFCSHFAPKMNEFNKYSIEERIRLMYALRGKVEDDFLTRIQAHGTVEL 95
DekkRIckYtSnDGklkL<-*
ek+RI+k+ SnDG+++L
M57.1 96 NEKHRISKFISNDGTFSL 113
SPK: domain 2 of 3, from 127 to 241: score 218.8, E = 8.3e-62
*->aeltrfmdFLvekTKdavevkkPlpvatkvfeeFselegsglse...
e++r++dFL+ekT+d++e Pl+v +++f+eFs+le+ +++ +++
M57.1 127 LEFVRLLDFLIEKTRDVIE---PLLVTKRIFQEFSRLEPGPRHKhpd 170
styykRFhrkLAPnmaklnnYSiEeRvRlMFaLsgkVeddFLerietiGt
++y+++F+ LAPnm+k ++YSiE+RvRl Fa++g++eddFL++iet+Gt
M57.1 171 KMYNRKFRYSLAPNMNKYSDYSIEDRVRLFFAFGGEIEDDFLRTIETHGT 220
VeLDekkRIckYtSnDGklkL<-*
V+LD+k+RI+kY+SnDG++kL
M57.1 221 VQLDDKRRITKYVSNDGNFKL 241
Nop10p: domain 1 of 1, from 312 to 325: score 6.7, E = 2.6
*->kYgKYRreLKkrlg<-*
k++KYR+e++ r
M57.1 312 KWSKYRIEERTRMM 325
Parvo_NS1: domain 1 of 1, from 307 to 329: score 2.7, E = 5.5
*->APqflaWarnnpndhisqwsvrvthefp<-*
AP++ +W++++ + + +r++++++
M57.1 307 APNMSKWSKYR-----IEERTRMMFAMK 329
WH2: domain 1 of 2, from 332 to 348: score 4.9, E = 17
*->aRsaLLaaIrsagqGikL<-*
s++La+I a+++++L
M57.1 332 VESDFLAQIE-ASGKVQL 348
SPK: domain 3 of 3, from 256 to 366: score 212.4, E = 7e-60
*->aeltrfmdFLvekTKdavevkkPlpvatkvfeeFselegsglsesty
+e+trfm+FL+e TKdave P+ ++ +v++ F++ eg++ +e+ y
M57.1 256 PEYTRFMEFLIETTKDAVE---PM-KVPLVLKAFKRQEGRKFTENGY 298
ykRFhrkLAPnmaklnnYSiEeRvRlMFaLsgkVeddFLerietiGtVeL
+RFh+kLAPnm+k+++Y iEeR R+MFa++gkVe+dFL++ie +G V+L
M57.1 299 GSRFHKKLAPNMSKWSKYRIEERTRMMFAMKGKVESDFLAQIEASGKVQL 348
DekkRIckYtSnDGklkL<-*
D+++ I+kYtSnDG+ +L
M57.1 349 DKNQLIVKYTSNDGEIEL 366
WH2: domain 2 of 2, from 621 to 631: score 1.1, E = 2.4e+02
*->aRsaLLaaIrsagq<-*
Rs+LL +I+ q
M57.1 621 LRSPLLWEIQ---Q 631