Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/M7.5
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Query:  M7.5  CE18887   Yeast YHX1 like status:Confirmed TR:Q21591 protein_id:CAA92753.1

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N
--------       -----------                              -----    ------- ---
ThiF           ThiF family                               64.5    1.9e-16   1
GlutR_NAD_bind Glutamyl-tRNAGlu reductase, NAD(P) bin     6.3        1.9   1
DUF194         Uncharacterized protein, DegV family C     4.5        3.2   1
SSXT           SSXT protein (N-terminal region)           3.8        8.9   1
DAO            FAD dependent oxidoreductase               3.1        6.8   1
Phytase        Phytase                                    1.7        8.3   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
Phytase          1/1     269   301 ..   351   381 .]     1.7      8.3
DAO              1/1     325   343 ..     1    19 [.     3.1      6.8
GlutR_NAD_bind   1/1     321   351 ..    21    51 ..     6.3      1.9
SSXT             1/1     379   391 ..     1    25 [.     3.8      8.9
DUF194           1/1     425   444 ..     1    22 [.     4.5      3.2
ThiF             1/1     323   466 ..     1   139 [.    64.5  1.9e-16

Alignments of top-scoring domains:
Phytase: domain 1 of 1, from 269 to 301: score 1.7, E = 8.3
                   *->KivsWEriA.dklG.emPdlnKqvdPRKlkDRs<-*
                      K v WEr A+dkl +   dl K  dP+ l +Rs
        M7.5   269    KAVGWERNAnDKLQpISVDLSKEFDPKILMERS    301

DAO: domain 1 of 1, from 325 to 343: score 3.1, E = 6.8
                   *->mdvvVIGgGViGlgtAldl<-*
                      ++v+++G+G  G+ +A++l
        M7.5   325    LKVLILGAGTLGCNIARCL    343

GlutR_NAD_bind: domain 1 of 1, from 321 to 351: score 6.3, E = 1.9
                   *->eLsdkkvLvIGAGeMgeLvakhLlakgvkki<-*
                      + s+ kvL++GAG  g+ +a++L++ gv++i
        M7.5   321    RYSQLKVLILGAGTLGCNIARCLIGWGVRHI    351

SSXT: domain 1 of 1, from 379 to 391: score 3.8, E = 8.9
                   *->RGkanmqGGGGGGvPqevnqatIQK<-*
                      RGka            e  qa+IQ+
        M7.5   379    RGKA------------ETAQAAIQR    391

DUF194: domain 1 of 1, from 425 to 444: score 4.5, E = 3.2
                   *->alfeelaesGYDlvIyIplSsg<-*
                      a+ e+l+++  D v++++l+s+
        M7.5   425    AKLEQLVKD-HD-VVFLALDSR    444

ThiF: domain 1 of 1, from 323 to 466: score 64.5, E = 1.9e-16
                   *->knskVLvvGaGGLGsealknLalaGvGsGGkltivDgDtVelsNLnR
                       + kVL++GaG LG+ ++  L+ +Gv+   ++   D+ tV+  N  R
        M7.5   323    SQLKVLILGAGTLGCNIARCLIGWGVR---HISFLDNSTVSYNNPVR 366

                   Qfl..fresDvGkMpKaeaAaerLqelNPdvevs................
                   Q l++f ++ +G+  Kae+A++++q+++P+++++ ++ + + ++++ +++
        M7.5   367 QSLseFEDARLGR-GKAETAQAAIQRIFPSIQATahrltvpmpghsidek 415

                   .vtavnerltpenaeefiegfqldvVvdalDnfearllingllllldaCv
                   +v + + ++   + e +++++  dvV+ alD+ ear l        +++
        M7.5   416 dVPELEKDIA--KLEQLVKDH--DVVFLALDSREARWLPT------VLAS 455

                   klgiplieagt<-*
                   ++++  i+ ++
        M7.5   456 RHKKIAISVAI    466



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