Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/M7.5
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Query: M7.5 CE18887 Yeast YHX1 like status:Confirmed TR:Q21591 protein_id:CAA92753.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ThiF ThiF family 64.5 1.9e-16 1
GlutR_NAD_bind Glutamyl-tRNAGlu reductase, NAD(P) bin 6.3 1.9 1
DUF194 Uncharacterized protein, DegV family C 4.5 3.2 1
SSXT SSXT protein (N-terminal region) 3.8 8.9 1
DAO FAD dependent oxidoreductase 3.1 6.8 1
Phytase Phytase 1.7 8.3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Phytase 1/1 269 301 .. 351 381 .] 1.7 8.3
DAO 1/1 325 343 .. 1 19 [. 3.1 6.8
GlutR_NAD_bind 1/1 321 351 .. 21 51 .. 6.3 1.9
SSXT 1/1 379 391 .. 1 25 [. 3.8 8.9
DUF194 1/1 425 444 .. 1 22 [. 4.5 3.2
ThiF 1/1 323 466 .. 1 139 [. 64.5 1.9e-16
Alignments of top-scoring domains:
Phytase: domain 1 of 1, from 269 to 301: score 1.7, E = 8.3
*->KivsWEriA.dklG.emPdlnKqvdPRKlkDRs<-*
K v WEr A+dkl + dl K dP+ l +Rs
M7.5 269 KAVGWERNAnDKLQpISVDLSKEFDPKILMERS 301
DAO: domain 1 of 1, from 325 to 343: score 3.1, E = 6.8
*->mdvvVIGgGViGlgtAldl<-*
++v+++G+G G+ +A++l
M7.5 325 LKVLILGAGTLGCNIARCL 343
GlutR_NAD_bind: domain 1 of 1, from 321 to 351: score 6.3, E = 1.9
*->eLsdkkvLvIGAGeMgeLvakhLlakgvkki<-*
+ s+ kvL++GAG g+ +a++L++ gv++i
M7.5 321 RYSQLKVLILGAGTLGCNIARCLIGWGVRHI 351
SSXT: domain 1 of 1, from 379 to 391: score 3.8, E = 8.9
*->RGkanmqGGGGGGvPqevnqatIQK<-*
RGka e qa+IQ+
M7.5 379 RGKA------------ETAQAAIQR 391
DUF194: domain 1 of 1, from 425 to 444: score 4.5, E = 3.2
*->alfeelaesGYDlvIyIplSsg<-*
a+ e+l+++ D v++++l+s+
M7.5 425 AKLEQLVKD-HD-VVFLALDSR 444
ThiF: domain 1 of 1, from 323 to 466: score 64.5, E = 1.9e-16
*->knskVLvvGaGGLGsealknLalaGvGsGGkltivDgDtVelsNLnR
+ kVL++GaG LG+ ++ L+ +Gv+ ++ D+ tV+ N R
M7.5 323 SQLKVLILGAGTLGCNIARCLIGWGVR---HISFLDNSTVSYNNPVR 366
Qfl..fresDvGkMpKaeaAaerLqelNPdvevs................
Q l++f ++ +G+ Kae+A++++q+++P+++++ ++ + + ++++ +++
M7.5 367 QSLseFEDARLGR-GKAETAQAAIQRIFPSIQATahrltvpmpghsidek 415
.vtavnerltpenaeefiegfqldvVvdalDnfearllingllllldaCv
+v + + ++ + e +++++ dvV+ alD+ ear l +++
M7.5 416 dVPELEKDIA--KLEQLVKDH--DVVFLALDSREARWLPT------VLAS 455
klgiplieagt<-*
++++ i+ ++
M7.5 456 RHKKIAISVAI 466