Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/M7.9
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Query: M7.9 CE12220 status:Partially_confirmed TR:O17974 protein_id:CAA92752.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
DUF148 Domain of unknown function DUF148 165.1 1.2e-45 1
Lipoprotein_17 Lipoprotein associated domain 6.8 2.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Lipoprotein_17 1/1 6 34 .. 1 30 [. 6.8 2.6
DUF148 1/1 40 161 .. 1 128 [] 165.1 1.2e-45
Alignments of top-scoring domains:
Lipoprotein_17: domain 1 of 1, from 6 to 34: score 6.8, E = 2.6
*->seLeeeinkIssielkensklkknkLPSeI<-*
s L+ + ++ss+ l++n + k LP ++
M7.9 6 SLLILLVASFSSLVLSQNDSKK-GGLPKKV 34
DUF148: domain 1 of 1, from 40 to 161: score 165.1, E = 1.2e-45
*->PpFLrnvpaearqeffaIlknNesLTiaqkeeqlqaWAekygGvsdq
P +Lrn+++e +q+++aI+ N++LTi+q+e+q a+Aek+g ++++
M7.9 40 PAYLRNLTKEEKQQYYAIFG-NKDLTIKQQEDQRLAFAEKHG-FGQA 84
ykeFqknvkaqeaevkknvtqvIsnLSPaAKsVqaqLeaIldNknlTrkq
+k+ +k ++++++ ++k++ ++I+nL +++++ ++I+dNk++T q
M7.9 85 IKDDIKLKAGNHELIRKERPEIIKNLL----AAHEATMKIFDNKDQTLSQ 130
kheaiqaLkkqypqEvraLffIakqirgrgg<-*
+++a++aLkk+yp+ ++L++I++ i+g+g+
M7.9 131 REAAVNALKKKYPHAPSTLYYISRLITGNGK 161