Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/M70.3a
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Query: M70.3a CE17195 status:Partially_confirmed TR:Q965J8 protein_id:AAK71388.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
WSN Domain of unknown function 57.0 1.9e-14 1
Herpes_glycop_D Herpesvirus glycoprotein D 5.4 1.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
WSN 1/1 106 167 .. 8 72 .] 57.0 1.9e-14
Herpes_glycop_D 1/1 787 854 .. 337 409 .] 5.4 1.9
Alignments of top-scoring domains:
WSN: domain 1 of 1, from 106 to 167: score 57.0, E = 1.9e-14
*->enlsilaRVtNAIsLqaglingsiksddvIaELLniGtinpsqlsel
+++ +laRV+ AIsL +gl + si+sd++I+ LLn i+ ++l +l
M70.3a 106 KRIPMLARVVSAISLYNGLVDNSIPSDEAITDLLN---IGGVKLKDL 149
invdlkkiveglngLkei<-*
+++d++k+++ + + +e+
M70.3a 150 ETFDKTKVDDVIAKWEEA 167
Herpes_glycop_D: domain 1 of 1, from 787 to 854: score 5.4, E = 1.9
*->peadPevvPsisdeevpspppatpaNpdakvtsviigivvlalliga
p+a + + +++pppa+++ + +ii +v+++l ++
M70.3a 787 PAA-------VKKAQASTPPPASDNS-----MMIIIAVSVAVVLVAS 821
iivgvvyyil.......rRrRkeakkyvrlpps<-*
i+++++++ ++ + +r++ +++++++++++s
M70.3a 822 ILIVAGLWFFgflpfcpRKKNSKTAGRDQKGKS 854