hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/M88.5
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Query:  M88.5  CE03509   hnRNP K status:Partially_confirmed TR:Q21605 protein_id:CAA84338.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
KH       KH domain                                      164.4    5.4e-46   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
KH         1/4     314   368 ..     1    49 []    40.5  4.3e-10
KH         2/4     402   464 ..     1    49 []    42.9  8.8e-11
KH         3/4     570   617 ..     1    49 []    47.5  4.1e-12
KH         4/4     711   759 ..     1    49 []    47.1  5.1e-12

Alignments of top-scoring domains:
KH: domain 1 of 4, from 314 to 368: score 40.5, E = 4.3e-10
                   *->evlvpasrvGliIGkgGsnIkeireetgakIdipddse......gsv
                      + +v  +++++iIG++Gs+Ik i + t +++d+ + s ++++  g++
       M88.5   314    RCVVEGKYHAVIIGPNGSTIKDIASSTRCRVDFVNLSKkertvlGNN 360

                   erivtitg<-*
                   +ri t+ g
       M88.5   361 DRILTVHG    368

KH: domain 2 of 4, from 402 to 464: score 42.9, E = 8.8e-11
                   *->evlvpasrvGliIGkgGsnIkeireetgakIdipddse.........
                      ++  +++++G++IGk Gs Ikei+++tg++I + +++e++++ ++ +
       M88.5   402    RMRAHNQLCGRLIGKAGSSIKEIMQKTGTNITVTKYIEppggisglt 448

                   .....gsverivtitg<-*
                    ++  g  er+++++g
       M88.5   449 anellGLMERTIMVRG    464

KH: domain 3 of 4, from 570 to 617: score 47.5, E = 4.1e-12
                   *->evlvpasrvGliIGkgGsnIkeireetgakIdipddsegsverivti
                      ++ vp s++G++IG +G+nIk i ++tga+++i+ ++ + ++r+ ++
       M88.5   570    RMWVPDSMIGALIGAKGKNIKMIIRDTGASVKIEAPE-EKTQREAEE 615

                   tg<-*
                   ++
       M88.5   616 AE    617

KH: domain 4 of 4, from 711 to 759: score 47.1, E = 5.1e-12
                   *->evlvpasrvGliIGkgGsnIkeireetgakIdipddsegsverivti
                      ev vp+  +G+iIGkgG+n++e+++ tga ++ip+++++  e+ + +
       M88.5   711    EVSVPTRIIGRIIGKGGQNVRELQRITGAVVKIPEEERNGGEVYRHD 757

                   tg<-*
                    g
       M88.5   758 DG    759

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