Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/R02C2.2
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Query: R02C2.2 CE12478 protein kinase status:Partially_confirmed TR:O44546 protein_id:AAC48229.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
pkinase Protein kinase domain 198.8 8.4e-56 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
pkinase 1/1 25 284 .. 1 288 [. 198.8 8.4e-56
Alignments of top-scoring domains:
pkinase: domain 1 of 1, from 25 to 284: score 198.8, E = 8.4e-56
*->yelleklGeGsfGkVykakhkdktgkiVAvKilkk...ekesikekr
ye+l++lG+GsfG+V ++ ++ + +++ A+K + +++++e+i++
R02C2.2 25 YEVLKPLGQGSFGQVALVSNRRYPEMLAALKRIVItgqDREYIDA-- 69
flrEiqilkrLs.HpNIvrligvfedtddhlylvmEymegGdLfdylrrn
++ Ei i +L +H+N+++++g + + +y+ +Ey++gGdL++ +++
R02C2.2 70 IRKEITIQESLTgHENVIQVLGKES-DAQFCYMFLEYADGGDLYEKITSG 118
ggplsekeakkialQilrGleYLHsngivHRDLKpeNILlden....dgt
+s +ea ++++Q+++Gl++LH + + HRD+KpeN++l++ ++++ +
R02C2.2 119 C-SFSLEEAHSYFKQLVNGLKFLHCRDVAHRDIKPENLMLTHSgkseMRH 167
vKiaDFGLArlle...sssklttfvGTpwYmmAPEvilegrgysskvDvW
+KiaDFGLA+ ++ ++ + +++G+ +Y+ APE++ ++ ++++D+W
R02C2.2 168 LKIADFGLATWYRykgAELIFEQRCGSVEYV-APEIYTGAQYRGPQIDIW 216
SlGviLyElltggplfpgadlpaftggdevdqliifvlklPfsdelpktr
S+Gv+L +lt+ +lP++ +
R02C2.2 217 SAGVVLLAMLTR--------------------------QLPWEF-----P 235
idpleelfriikrpglrlplpsncSeelkdLlkkcLnkDPskRpGsatak
+++ +++f k++ +++ + ++S +k+Ll k+L + ++R t++
R02C2.2 236 CMTNKRYFFWMKNRVAHIDAWNELSCRAKKLLWKMLSPGSENRA---TIE 282
ei<-*
ei
R02C2.2 283 EI 284