hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/R02F2.2
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Query:  R02F2.2  CE31046    status:Partially_confirmed TN:AAL06044 protein_id:AAL06044.3

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
RhoGEF   RhoGEF domain                                  117.9    2.6e-33   1
SapB_1   Saposin-like type B, region 1                    8.0       0.72   1
VanW     VanW like protein                                5.5        2.1   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RhoGEF     1/1     401   583 ..     1   207 []   117.9  2.6e-33
SapB_1     1/1     690   717 ..    12    39 .]     8.0     0.72
VanW       1/1     889   914 ..     1    26 [.     5.5      2.1

Alignments of top-scoring domains:
RhoGEF: domain 1 of 1, from 401 to 583: score 117.9, E = 2.6e-33
                   *->vlkElleTEkkYvrdLeildnvymkpLreaaisskpvltpddietiF
                      +++Ell TEk +v+ Le l+  ym+pLr++      ++ +  ++ iF
     R02F2.2   401    AARELLDTEKSFVEGLEFLVTKYMRPLRQPLECT--LIEASLVDKIF 445

                   sNiediyefhreFLkssLearisssqfedlDekkiepsaqrlGdlFlklk
                     i++i+  h+ +L   L +ri ++             +  lGd++l+++
     R02F2.2   446 YRIPEILAHHQVLLT-TLSQRIDQW-----------HKDAILGDVLLAHF 483

                   epflqv..YgeYcsnkpyAqelleklrqaasnpqFaeflde.veassntg
                   + ++ +++Y ++++n++ A+  +++   a + ++F +  ++ ++ ++n
     R02F2.2   484 SKQSMIetYISFVDNFKFAKASIIQ---ARQKHAFEKYYNRcCRDHPN-- 528

                   AkddavkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedqpdredLkka
                         kl+L+sLL+ P+qR++rY+L +k+ Lkhtp   +++dre+L  a
     R02F2.2   529 ------KLDLDSLLISPIQRVPRYELIVKQMLKHTPV--EHEDRERLLRA 570

                   ldllqdlaksiNe<-*
                   ++ ++ la  iN+
     R02F2.2   571 QRHIHCLAVAINQ    583

SapB_1: domain 1 of 1, from 690 to 717: score 8.0, E = 0.72
                   *->kevenlLkdnkTqeeIlkaLeklCdlLP<-*
                      +eve  L++ + ++ +lk + +lC+lL+
     R02F2.2   690    EEVERKLESSREDDRVLKKMSQLCSLLK    717

VanW: domain 1 of 1, from 889 to 914: score 5.5, E = 2.1
                   *->erllsellketstqllasnttydmgS<-*
                      +++l++ll et++ + +s++++ ++S
     R02F2.2   889    QKSLEHLLNETIMDINSSGSDTESSS    914

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