Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/R03E1.1
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Query: R03E1.1 CE18901 WD domain, G-beta repeat (3 domains) status:Partially_confirmed TR:Q9XTZ0 protein_id:CAB07400.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
WD40 WD domain, G-beta repeat 114.2 1.1e-30 6
DUF191 Uncharacterized ACR, COG2107 4.7 2.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
WD40 1/6 607 645 .. 1 39 [] 22.9 0.0001
WD40 2/6 707 744 .. 1 39 [] 36.5 1.4e-08
WD40 3/6 748 786 .. 1 39 [] 31.4 3.9e-07
WD40 4/6 790 828 .. 1 39 [] 3.6 33
WD40 5/6 840 876 .. 1 39 [] 5.8 7.4
DUF191 1/1 895 903 .. 1 9 [. 4.7 2.6
WD40 6/6 884 920 .. 1 39 [] 21.5 0.00025
Alignments of top-scoring domains:
WD40: domain 1 of 6, from 607 to 645: score 22.9, E = 0.0001
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
+ + Ht++++c++fs g+++a+++ D +++W
R03E1.1 607 TVEQELNnEHTGAIWCIKFSIC-GKLMATAGQDSILRVWV 645
WD40: domain 2 of 6, from 707 to 744: score 36.5, E = 1.4e-08
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
++ a l+gHt+ + +v++s + +++s++ D+t+klW+
R03E1.1 707 AKPFALLkGHTADILDVSWSKN--YFILSSGMDRTVKLWH 744
WD40: domain 3 of 6, from 748 to 786: score 31.4, E = 3.9e-07
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
ecl +++ ++vtcvaf p + +y++sgS Dg++++W+
R03E1.1 748 NECLCCFqHI-DFVTCVAFLPKDDRYFLSGSLDGKLRMWH 786
WD40: domain 4 of 6, from 790 to 828: score 3.6, E = 33
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
+++ + ++++t++ f+ + g++ + g Dg++ +
R03E1.1 790 KKVAVWNdTEKKYITAMTFVKS-GKFAVVGTYDGKCIFYT 828
WD40: domain 5 of 6, from 840 to 876: score 5.8, E = 7.4
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
++ ++ + vt + + d l+ S D i+++d
R03E1.1 840 VRSTRGKnARGHKVTGLTSHGD---KLLVTSNDSRIRMYD 876
DUF191: domain 1 of 1, from 895 to 903: score 4.7, E = 2.6
*->kisvAhSPD<-*
i++A+SPD
R03E1.1 895 QIRAAFSPD 903
WD40: domain 6 of 6, from 884 to 920: score 21.5, E = 0.00025
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
++ + + ++H s ++ afspd g+++++gS+D+ +++W
R03E1.1 884 CKFKGVQnDH-SQIR-AAFSPD-GRHIICGSEDKFVYIWR 920