Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/R03G8.3
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Query: R03G8.3 CE03527 status:Partially_confirmed TR:Q21672 protein_id:CAA93678.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
DUF229 Protein of unknown function (DUF229) 316.1 4.1e-91 3
PB1 PB1 domain 6.0 3.4 1
DUF701 Putative zinc binding domain (DUF701) 5.2 8.8 1
Cytomegalo_gL Cytomegalovirus glycoprotein L 5.1 1.6 1
Sulfatase Sulfatase 2.9 2.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PB1 1/1 56 91 .. 50 85 .] 6.0 3.4
DUF229 1/3 193 397 .. 1 254 [. 143.4 6.8e-40
DUF701 1/1 444 460 .. 46 64 .] 5.2 8.8
Cytomegalo_gL 1/1 483 499 .. 267 285 .] 5.1 1.6
Sulfatase 1/1 501 514 .. 320 333 .. 2.9 2.1
DUF229 2/3 444 668 .. 316 561 .] 167.5 1.1e-46
DUF229 3/3 714 746 .. 530 561 .] 10.1 0.038
Alignments of top-scoring domains:
PB1: domain 1 of 1, from 56 to 91: score 6.0, E = 3.4
*->dlVsissDeDLeeaieeyrsllsegsktlrlfvfpa<-*
+l+ i+s++DL+ +++++ls+++ ++lfvfp+
R03G8.3 56 SLLRINSQDDLDSHEVFANRALSQRTLMFKLFVFPT 91
DUF229: domain 1 of 3, from 193 to 397: score 143.4, E = 6.8e-40
*->sifkpnpylkCsketllttktfnitfgylrlnidaelalarlnvesl
+++ np ++C+k++ ++t++ n++ + + +++
R03G8.3 193 LNMEVNPISNCNKSREPLTFL-NNGSWGVVNKKT------------- 225
enleCyykreikRkrdsaniygysklfklppkltqsvkvpvgiiegevef
+l C++ r+++Rk ++ n +g+++++++ p++ +e+
R03G8.3 226 -KLICRA-RCHTRKSERYNVIGNWTYTPG----------PIN-----CEV 258
irteCwsdfgkiyrkflqkDvfeflhdeerlriipksgdkrvktekstpk
++ +C ++ + y +flh+ ++i +++ +++ ++ +
R03G8.3 259 VEAVCADGKKDVY---------GFLHT----QVIATPP---KQPTVKVS- 291
esdkpSVlilGlDSlSrmnfrRsMPrTvkflesnlgwvefqGYNKVGDNT
e + ++V ++ lDSlS ++++Rs+ rT ++++++++ v f++ NKVGDN+
R03G8.3 292 ELKNYDVTVIMLDSLSFTQAKRSLLRTISYMTNHMDAVLFPYINKVGDNS 341
fpNLlplLtGkllEavkklidsegeaeancdlppskegclDkcpfIWKdF
+pN+ +l++Gk+lE++++ ++e ++ +++ + ++++ D+ + ++K++
R03G8.3 342 RPNGAALWFGKSLEKLDRSLFEEENVPVDWSHAYMCHVYKDNETSLFKEY 391
kdaYGYa<-*
++ GY+
R03G8.3 392 QNY-GYK 397
DUF701: domain 1 of 1, from 444 to 460: score 5.2, E = 8.8
*->CRvgesfqtninpLsepiD<-*
C e+++t +Ls+ i+
R03G8.3 444 C--REDHHTLLDYLSQFIN 460
Cytomegalo_gL: domain 1 of 1, from 483 to 499: score 5.1, E = 1.6
*->kLpaPfrssdrvnllirsy<-*
++ P+++ d+++ li+++
R03G8.3 483 GF--PHSDKDFHKFLIKHR 499
Sulfatase: domain 1 of 1, from 501 to 514: score 2.9, E = 2.1
*->lldNTlvifTSDnG<-*
+ldN +v+f+ D+G
R03G8.3 501 QLDNSFVFFMGDHG 514
DUF229: domain 2 of 3, from 444 to 668: score 167.5, E = 1.1e-46
*->rrplhevllDylrqFlpryrdspdipfFgFfWsnslsHddfnlasal
+r++h++llDyl qF+++y d++ F++ W + l Hd+ n+ +
R03G8.3 444 CREDHHTLLDYLSQFINAYPDQN---KFRWIWASILGHDSENGFPHS 487
DedllkyLkkleenGlldntivifmSDHGlRfGklrrtsqGmlEERlPfm
D+d++k+L k+ e+ ldn++v+fm+DHGlRfG++r+t+ G l+ ++Pf+
R03G8.3 488 DKDFHKFLIKHREQ--LDNSFVFFMGDHGLRFGNVRKTFVGTLDVSNPFL 535
sillPpwlRnyekyPqaveNLelNahrLtTpFDlHaTLkhilnlsslsdk
+++P+ lR + ++ + Na + +T+FD +aT+ +il+ +s s++
R03G8.3 536 AVSIPKNLR---QTTGLLNVMRENAQKIQTHFDTRATMLDILKYQSASNF 582
ellrrtkaldclpsalprgiSLFlPiPdn.RtCstAgIpehwCtCe.syk
+l+ + ++ + +g+S+++ +Pd R+C +Ip ++C+C+ ++
R03G8.3 583 TDLDPLIIPGE------KGYSYIRTQPDIlRNCRNMPIPMQYCICQfNKT 626
eiptndtkekalvrriAekvvdriNellkelnteeElltplCapLeLqkV
+++t+ + ++ +e+v ++N++++e + +t+ C+ ++ + V
R03G8.3 627 QVSTKSE----TAKGVGEAVALAVNNEIEEGK-----FTDKCVKMKVDHV 667
e<-*
R03G8.3 668 V 668
DUF229: domain 3 of 3, from 714 to 746: score 10.1, E = 0.038
*->vvdriNellkelntee.ElltplCapLeLqkVe<-*
+v+r N++ ++ ++ +E ++p+C++ ++k e
R03G8.3 714 MVERSNKYGSTAYCIGsEHHRPYCYCKNQSKLE 746