Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/R04A9.2
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Query:  R04A9.2  CE04789    status:Partially_confirmed TR:Q21691 protein_id:AAA83284.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
Piwi     Piwi domain                                    486.0   2.9e-142   1
PAZ      PAZ domain                                     155.8    1.4e-43   1
Nsp1_C   Nsp1-like C-terminal region                      5.5        3.9   1
Spo7     Spo7-like protein                                2.8        3.6   1
LuxE     Acyl-protein synthetase, LuxE                    1.2        9.7   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PAZ        1/1     378   523 ..     1   161 []   155.8  1.4e-43
Nsp1_C     1/1     688   712 ..    99   123 .]     5.5      3.9
Spo7       1/1     839   851 ..     1    13 [.     2.8      3.6
Piwi       1/1     673  1001 ..     1   341 []   486.0 2.9e-142
LuxE       1/1    1013  1034 ..     1    24 [.     1.2      9.7

Alignments of top-scoring domains:
PAZ: domain 1 of 1, from 378 to 523: score 155.8, E = 1.4e-43
                   *->lpvlelledylterts....iklsdrdrkkvkealkGlkVetthrnn
                      +  ++++e+++++++++ ++ ++sd +  ++k+ lkGl++ + h ++
     R04A9.2   378    DGEIDYDERTVSHYQRqfqdERISDGMLNTLKQSLKGLDCQPIHLKD 424

                   kglqeaprkykiaglssnpaplskFplkdnnGneegkeitvaeYFkekYn
                      ++a+r ++i+++++  a +++F+ k+++G+  +k +++ eY++++Yn
     R04A9.2   425 ---SKANRSIMIDEIHTGTADSVTFEQKLPDGE--MKLTSITEYYLQRYN 469

                   irLkypdlPllvvggrsknlNlLPRfnkrnsqknylPpELcsivpgQryt
                   +rLk+p+lPl+ +++ ++                ++P+EL+si+pgQr++
     R04A9.2   470 YRLKFPHLPLVTSKRAKCY--------------DFYPMELMSILPGQRIK 505

                   kklferqtsalikkraqr<-*
                     +++ ++++ +++++++
     R04A9.2   506 QSHMTVDIQSYMTGKMSS    523

Nsp1_C: domain 1 of 1, from 688 to 712: score 5.5, E = 3.9
                   *->dlLdplEeqvkeqsgtiylqhadee<-*
                      d+L ++Ee++ +q ++i++  ad
     R04A9.2   688    DILKYFEEKLGQQTIQISSETADKF    712

Spo7: domain 1 of 1, from 839 to 851: score 2.8, E = 3.6
                   *->sSsivPaslsvyr<-*
                      sSs+ P +  vyr
     R04A9.2   839    SSSYLPETVVVYR    851

Piwi: domain 1 of 1, from 673 to 1001: score 486.0, E = 2.9e-142
                   *->livvvlpddnkedlekflydeiKkreltelgipsQcvllktlkkksk
                      +iv+++  ++ +d+    +d++K++e++ +++++Q    + +k +++
     R04A9.2   673    TIVFGIIAEKRPDM----HDILKYFEEKLGQQTIQISSETADKFMRD 715

                   qGgrltltNvilkanmKlGGlNyklniekeprck.VC.N.e.mrviplkp
                   +Gg++t++Nvi+k+n K+GG+N+ ++++++++++ VC+N+++mr++++ +
     R04A9.2   716 HGGKQTIDNVIRKLNPKCGGTNFLIDVPESVGHRvVCnNsAeMRAKLYAK 765

                   tliiGfDvshppaRTkfDrenggrlnnpsvagvvasmdsphgtkfrgdvr
                   t++iGf++sh +aRT+fD+++ + +++p+v+gv++s++  h+ +++g+++
     R04A9.2   766 TQFIGFEMSHTGARTRFDIQKVMFDGDPTVVGVAYSLK--HSAQLGGFSY 813

                   lqpagqElltdlkkgiiresLrsfykntrkkkPkrIivYRDGvSEGqfsq
                   +q+++ ++lt+l++  ++ +L+++++++  ++P+ ++vYR+G +EG+++q
     R04A9.2   814 FQESRLHKLTNLQE-KMQICLNAYEQSSS-YLPETVVVYRVGSGEGDYPQ 861

                   vlnyEvnqikeackklsesyqeqePkltvIvvqKrHhtRfFasdksdggs
                   ++n Evn++k a +k +++y+   Pk++vI++q+++h R+F+++++++g
     R04A9.2   862 IVN-EVNEMKLAARKKKHGYN---PKFLVICTQRNSHIRVFPEHINERG- 906

                   kakaqNvpPGTvVDdkitspeyydFylcsqagrqGTvkPthYtVlyDdig
                   k+++qNv++GT+VD+  +s++y +F+lc+q++++GTvkPt+Yt++++d++
     R04A9.2   907 KSMEQNVKSGTCVDVPGASHGYEEFILCCQTPLIGTVKPTKYTIIVNDCR 956

                   eyylsadelqdLTykLCymyqrvtrpvslPaPvyYAhllAkrgrnnlk<-
                      +s++e++++Ty+L++++q+++ p+++P + y+A++lAkrg+nn+k
     R04A9.2   957 ---WSKNEIMNVTYHLAFAHQVSYAPPAIPNVSYAAQNLAKRGHNNYK   1001

                   *

     R04A9.2     -   -

LuxE: domain 1 of 1, from 1013 to 1034: score 1.2, E = 9.7
                   *->MtvlsevdkenitaSseiDDLifm<-*
                         +++ ++e+i++S e+DD i+m
     R04A9.2  1013    -SYRIKEKHEEIISSEEVDD-ILM    1034



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