Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/R04A9.2
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Query: R04A9.2 CE04789 status:Partially_confirmed TR:Q21691 protein_id:AAA83284.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Piwi Piwi domain 486.0 2.9e-142 1
PAZ PAZ domain 155.8 1.4e-43 1
Nsp1_C Nsp1-like C-terminal region 5.5 3.9 1
Spo7 Spo7-like protein 2.8 3.6 1
LuxE Acyl-protein synthetase, LuxE 1.2 9.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PAZ 1/1 378 523 .. 1 161 [] 155.8 1.4e-43
Nsp1_C 1/1 688 712 .. 99 123 .] 5.5 3.9
Spo7 1/1 839 851 .. 1 13 [. 2.8 3.6
Piwi 1/1 673 1001 .. 1 341 [] 486.0 2.9e-142
LuxE 1/1 1013 1034 .. 1 24 [. 1.2 9.7
Alignments of top-scoring domains:
PAZ: domain 1 of 1, from 378 to 523: score 155.8, E = 1.4e-43
*->lpvlelledylterts....iklsdrdrkkvkealkGlkVetthrnn
+ ++++e+++++++++ ++ ++sd + ++k+ lkGl++ + h ++
R04A9.2 378 DGEIDYDERTVSHYQRqfqdERISDGMLNTLKQSLKGLDCQPIHLKD 424
kglqeaprkykiaglssnpaplskFplkdnnGneegkeitvaeYFkekYn
++a+r ++i+++++ a +++F+ k+++G+ +k +++ eY++++Yn
R04A9.2 425 ---SKANRSIMIDEIHTGTADSVTFEQKLPDGE--MKLTSITEYYLQRYN 469
irLkypdlPllvvggrsknlNlLPRfnkrnsqknylPpELcsivpgQryt
+rLk+p+lPl+ +++ ++ ++P+EL+si+pgQr++
R04A9.2 470 YRLKFPHLPLVTSKRAKCY--------------DFYPMELMSILPGQRIK 505
kklferqtsalikkraqr<-*
+++ ++++ +++++++
R04A9.2 506 QSHMTVDIQSYMTGKMSS 523
Nsp1_C: domain 1 of 1, from 688 to 712: score 5.5, E = 3.9
*->dlLdplEeqvkeqsgtiylqhadee<-*
d+L ++Ee++ +q ++i++ ad
R04A9.2 688 DILKYFEEKLGQQTIQISSETADKF 712
Spo7: domain 1 of 1, from 839 to 851: score 2.8, E = 3.6
*->sSsivPaslsvyr<-*
sSs+ P + vyr
R04A9.2 839 SSSYLPETVVVYR 851
Piwi: domain 1 of 1, from 673 to 1001: score 486.0, E = 2.9e-142
*->livvvlpddnkedlekflydeiKkreltelgipsQcvllktlkkksk
+iv+++ ++ +d+ +d++K++e++ +++++Q + +k +++
R04A9.2 673 TIVFGIIAEKRPDM----HDILKYFEEKLGQQTIQISSETADKFMRD 715
qGgrltltNvilkanmKlGGlNyklniekeprck.VC.N.e.mrviplkp
+Gg++t++Nvi+k+n K+GG+N+ ++++++++++ VC+N+++mr++++ +
R04A9.2 716 HGGKQTIDNVIRKLNPKCGGTNFLIDVPESVGHRvVCnNsAeMRAKLYAK 765
tliiGfDvshppaRTkfDrenggrlnnpsvagvvasmdsphgtkfrgdvr
t++iGf++sh +aRT+fD+++ + +++p+v+gv++s++ h+ +++g+++
R04A9.2 766 TQFIGFEMSHTGARTRFDIQKVMFDGDPTVVGVAYSLK--HSAQLGGFSY 813
lqpagqElltdlkkgiiresLrsfykntrkkkPkrIivYRDGvSEGqfsq
+q+++ ++lt+l++ ++ +L+++++++ ++P+ ++vYR+G +EG+++q
R04A9.2 814 FQESRLHKLTNLQE-KMQICLNAYEQSSS-YLPETVVVYRVGSGEGDYPQ 861
vlnyEvnqikeackklsesyqeqePkltvIvvqKrHhtRfFasdksdggs
++n Evn++k a +k +++y+ Pk++vI++q+++h R+F+++++++g
R04A9.2 862 IVN-EVNEMKLAARKKKHGYN---PKFLVICTQRNSHIRVFPEHINERG- 906
kakaqNvpPGTvVDdkitspeyydFylcsqagrqGTvkPthYtVlyDdig
k+++qNv++GT+VD+ +s++y +F+lc+q++++GTvkPt+Yt++++d++
R04A9.2 907 KSMEQNVKSGTCVDVPGASHGYEEFILCCQTPLIGTVKPTKYTIIVNDCR 956
eyylsadelqdLTykLCymyqrvtrpvslPaPvyYAhllAkrgrnnlk<-
+s++e++++Ty+L++++q+++ p+++P + y+A++lAkrg+nn+k
R04A9.2 957 ---WSKNEIMNVTYHLAFAHQVSYAPPAIPNVSYAAQNLAKRGHNNYK 1001
*
R04A9.2 - -
LuxE: domain 1 of 1, from 1013 to 1034: score 1.2, E = 9.7
*->MtvlsevdkenitaSseiDDLifm<-*
+++ ++e+i++S e+DD i+m
R04A9.2 1013 -SYRIKEKHEEIISSEEVDD-ILM 1034