Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/R04E5.2
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Query: R04E5.2 CE28746 status:Partially_confirmed TR:Q9GYL2 protein_id:AAG00012.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
DUF21 Domain of unknown function DUF21 122.5 2.8e-34 1
CBS CBS domain 10.9 0.31 2
Usp Universal stress protein family 5.5 3.3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Usp 1/1 37 67 .. 91 123 .. 5.5 3.3
DUF21 1/1 150 293 .. 1 160 [. 122.5 2.8e-34
CBS 1/2 344 383 .. 1 39 [. 4.0 23
CBS 2/2 493 507 .. 40 54 .] 6.8 3.9
Alignments of top-scoring domains:
Usp: domain 1 of 1, from 37 to 67: score 5.5, E = 3.3
*->ipsdktivvnGepaetilEiakekgadLVVvGs<-*
++ ++ ++++G+++e ++E+ e +dLV+ G+
R04E5.2 37 DVDASGFLGYGDAGELLVEANTE--VDLVIFGH 67
DUF21: domain 1 of 1, from 150 to 293: score 122.5, E = 2.8e-34
*->ilelliiliLillsafFSasEfalvslrkvrleqlaksGnkkaklal
+ + i+++L +sa++S+++++l++l++ +l l ksG+ ++k+ +
R04E5.2 150 WAQCAILCLLFSISALCSGLTLGLMALTPQELSILMKSGSQREKKHA 196
klierldrylsavligitlvnilagilgeplldrllgplfknslseslah
++i +++ + + +l+++ + n++++ ++++l+d l +
R04E5.2 197 AAIYPIRCHGNRLLCTVIIMNVIVNTGITLLFDDLAE------------- 233
dlsfalalgisTfLivvfGEiiPKtiAiqnaervalltappliffyllft
+++a++ sT+ ivvfGEi+P++i+++++++v+++t+++ ff++l++
R04E5.2 234 ---GLIAFVASTVGIVVFGEILPQSICVKYGLAVGANTIFITKFFMFLLF 280
Plvwllnlianil<-*
P++w+l +i++++
R04E5.2 281 PITWPLGKILDKY 293
CBS: domain 1 of 2, from 344 to 383: score 4.0, E = 23
*->dimtrdvvtvspdttl.eealelmrengisrlPVvdedgk<-*
++ ++dv+ +s+d+ l++e + +++++g++r+PV +++++
R04E5.2 344 MTDIDDVFMLSEDQVLnAETMTKISDSGYTRIPVFEGNNR 383
CBS: domain 2 of 2, from 493 to 507: score 6.8, E = 3.9
*->lvGivtlrDllralv<-*
lvG++tl+D+ ++l+
R04E5.2 493 LVGLITLEDITEELL 507