Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/R05D11.1
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Query: R05D11.1 CE06236 MAD protein status:Partially_confirmed TR:Q21733 protein_id:CAA99889.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
MH2 MH2 domain 358.7 6.3e-104 1
MH1 MH1 domain 172.0 4.8e-52 1
PNGase PNGase-like conserved region 3.8 9.5 1
Mlo Mlo family 1.5 8.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PNGase 1/1 26 39 .. 57 72 .] 3.8 9.5
MH1 1/1 26 133 .. 7 143 .] 172.0 4.8e-52
Mlo 1/1 216 243 .. 491 521 .] 1.5 8.8
MH2 1/1 343 524 .. 1 228 [] 358.7 6.3e-104
Alignments of top-scoring domains:
PNGase: domain 1 of 1, from 26 to 39: score 3.8, E = 9.5
*->kdpekkriGnIsWaFd<-*
+++e++ G+I+Wa+
R05D11.1 26 IITEGD--GTIYWALK 39
MH1: domain 1 of 1, from 26 to 133: score 172.0, E = 4.8e-52
*->lkqggetnaqeekwlrkavesLvKKLKeKkqeLeeLldAVesrgakp
++++g+ ++++++ +v++L++++++K+q++e+++dAV+++++k+
R05D11.1 26 IITEGD----GTIYWALKVTRLLSRVAKKHQCFEAFYDAVIKGDPKT 68
tktqRDvvePttttAPtYLgCvtiprsLdGrLeQvshrkGlPHViycRlw
+ +C++++++L+G+ +G+++++++R++
R05D11.1 69 R------------------CCPAHNEKLIGN-------FGRAIMCVLRAF 93
RWPdLqsenELKaldtCqyAfdsksdevCiNPYHYeRVee<-*
R+P++++e+++K++ tC++Af+s+s++vC+NPYHY++Ve+
R05D11.1 94 RFPVIRYESQVKSILTCRHAFNSHSRNVCLNPYHYRWVEL 133
Mlo: domain 1 of 1, from 216 to 243: score 1.5, E = 8.8
*->srsatpGtlsrsssgsSlvhllhnsntrsss<-*
+++ +++t s gsS+++ll+ sn + ++
R05D11.1 216 GSPCSSTTM---SLGSSFASLLQQSNRQDDE 243
MH2: domain 1 of 1, from 343 to 524: score 358.7, E = 6.3e-104
*->ysepesWcsIaYyElntrVGEtfkvsgnDavsvtvDGftA.RtDpsg
y+e++sW++++YyE++t++GE+++v+g+ ++++DGftA+RtD++
R05D11.1 343 YEESPSWLKLIYYEEGTMIGEKADVEGH---HCLIDGFTAsRTDSE- 385
enedRfCLGqLsNvnRqiseaiektRrhIGkGVrLsykadGemhVwvyNr
+++Rf+LG+++N+nR s++++++R+ IGkGVr+++ Ge V+v+N+
R05D11.1 386 -TRSRFSLGWYNNPNR--SPQTAEVRGLIGKGVRFYLL-AGE--VYVENL 429
SdspIFVqSpyLdepaGGfrpldkVhKvpPgaslKvFdfrkfyqllrqaa
+++p+FVqS+++++++G f+++ +V+K+pP++++KvFd+r+f+++lr+aa
R05D11.1 430 CNIPVFVQSIGANMKNG-FQLN-TVSKLPPTGTMKVFDMRLFSKQLRTAA 477
nsgfeAtaaQAAAvaGklppsnyiyekktqeeLrreAtegvdeLskmCti
++++ ++v++Ls+mCt+
R05D11.1 478 EKTY----------------------------------QDVYCLSRMCTV 493
RiSFVKGWGedYPqRQdItstPCWiEvhLnrp<-*
R+SF+KGWGe+Y +R+++ ++P+W+++hLn+p
R05D11.1 494 RVSFCKGWGEHY-RRSTVLRSPVWFQAHLNNP 524