Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/R05D8.8
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Query: R05D8.8 CE23899 locus:dhs-14 alcohol dehydrogenase status:Partially_confirmed TR:Q9N5G3 protein_id:AAF39953.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
adh_short short chain dehydrogenase 224.5 1.6e-63 1
HesB-like HesB-like domain 4.0 5.1 1
Shikimate_DH Shikimate / quinate 5-dehydrogenase 3.3 8.5 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Shikimate_DH 1/1 19 45 .. 123 150 .. 3.3 8.5
HesB-like 1/1 125 136 .. 1 12 [. 4.0 5.1
adh_short 1/1 5 262 .. 1 271 [] 224.5 1.6e-63
Alignments of top-scoring domains:
Shikimate_DH: domain 1 of 1, from 19 to 45: score 3.3, E = 8.5
*->aRAvayaLlklGvkkIyIaNRTveKAee<-*
+RA a+ L+++G +k++I R+++++ee
R05D8.8 19 GRATAVLLAQEG-AKVTITGRNADRLEE 45
HesB-like: domain 1 of 1, from 125 to 136: score 4.0, E = 5.1
*->mItLTdaAaahi<-*
++tLT +A++h+
R05D8.8 125 VVTLTQKAKEHL 136
adh_short: domain 1 of 1, from 5 to 262: score 224.5, E = 1.6e-63
*->tgKvaLvTGassGIGlaiAkrLakeGakVvvvdrreekae.qvaael
+gKvaLvTG s GIG+a+A La eGakV +++r+++++e++ + l
R05D8.8 5 SGKVALVTGSSNGIGRATAVLLAQEGAKVTITGRNADRLEeTRQEIL 51
kaelG.dralfiqlDvtdeeqvkaavaqaverlGdrlDvLVNNAGilgdg
k+ ++d +l i++D++ e + +v+ ++++G rlD+LVNNAG + +
R05D8.8 52 KSGVPeDHVLSIATDLATEKGQDELVNSTIQKFG-RLDILVNNAGAAFND 100
ppfe...elseedwervidvNltGvflltravlpamdhmlkrkgGrIvNi
+ + + + ++ ++r++++N ++v+ lt+ + + h+ k +G +vN+
R05D8.8 101 DQGRvgvDQDVSVYDRIMQINMRSVVTLTQKAKE---HLVK-AKGEVVNV 146
sSvaGlrvgvpglsaYsASKaavigltrsLAlElaphgtgIrVnavaPGg
sS+++ ++ p + Y+ SKaa+ + trs+A +l ++g +rVn+v+PG+
R05D8.8 147 SSIGAGPQAQPTFMYYAMSKAALDQYTRSAAIDLIQYG--VRVNSVSPGA 194
vdT..........dmtkalrsrlieakkkvrevadiadpeleeritstit
v T+ ++ + + dm+++++ + +e r+ i
R05D8.8 195 VVTgfgeamgmpaDMHEKYG------------------HFMESRKEC-I- 224
plgrygvtpeeianavlfLasdgasysvtgqtlnvdggi<-*
p+g +g +p +ian+++fLa+++ s ++ gq + +dgg
R05D8.8 225 PCGKMG-QPIDIANIIAFLADRKLSSYIIGQSIVADGGS 262