Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/R05F9.12
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Query: R05F9.12 CE31976 glycosyl hydralase\; sucrase-isomaltase status:Confirmed TR:Q21750 protein_id:AAA83174.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Glyco_hydro_31 Glycosyl hydrolases family 31 1279.0 0 1
trefoil Trefoil (P-type) domain 19.8 0.00062 1
CAV_VP3 Chicken anaemia virus VP-3 protein 2.6 8.8 1
tRNA-synt_1d tRNA synthetases class I (R) 2.2 8.2 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
trefoil 1/1 21 57 .. 10 44 .] 19.8 0.00062
CAV_VP3 1/1 244 259 .. 1 17 [. 2.6 8.8
tRNA-synt_1d 1/1 590 607 .. 364 381 .] 2.2 8.2
Glyco_hydro_31 1/1 115 875 .. 1 851 [] 1279.0 0
Alignments of top-scoring domains:
trefoil: domain 1 of 1, from 21 to 57: score 19.8, E = 0.00062
*->RvNCGydpgITedqCakkGCCF..DssipgvpWCFyp<-*
R++C ++p ++ C+++GC++++D++ ++pWC+++
R05F9.12 21 RFDCLPEPNGNQGACEARGCIWkeDDTGKNAPWCYFK 57
CAV_VP3: domain 1 of 1, from 244 to 259: score 2.6, E = 8.8
*->mnAlqedtPPGPstvFR<-*
nA t PGPs ++R
R05F9.12 244 -NAQEVTTAPGPSLIYR 259
tRNA-synt_1d: domain 1 of 1, from 590 to 607: score 2.2, E = 8.2
*->irYadlssnrdtdydfDl<-*
+r+ dl+ +++ + +f+l
R05F9.12 590 ARWEDLRTSVIGAQEFNL 607
Glyco_hydro_31: domain 1 of 1, from 115 to 875: score 1279.0, E = 0
*->PldfprndesvsspaesdlydtlnsegpFgFeviRkstgdvfnkkdk
P+dfpr ++++s+++ +t +s+g F+F+v R+st++
R05F9.12 115 PVDFPR-ETQSSTESL--SLSTSFSNGVFSFSVVRQSTNR------- 151
diseevlfdttfgphkdplvfsdqflqlstsLpseyivYGLGEhahksfr
+lfdt++g +l+fsdqf+q++t+Lpse++ YG+GE++h+s+r
R05F9.12 152 -----KLFDTSIG----GLIFSDQFIQIATYLPSENM-YGWGENTHQSLR 191
rdtngwkvEeetytlfnrDvgpyeidsldpqNLYGshPfmYmdledskGs
+d++++ t+ +f+rD++p+++ sld++NLYG+hP+ Ym le + G+
R05F9.12 192 HDFTKY----LTWAMFARDQPPNSG-SLDTVNLYGVHPY-YMILEPD-GK 234
aHGVFllNSnameVdiqpgpadkgfsKpePqtdltyrviGGilDfyfFlG
aHGV++ NSna+eV++ pgp+ l+yr+iGG+lD+yfF+G
R05F9.12 235 AHGVLIINSNAQEVTTAPGPS------------LIYRTIGGNLDMYFFPG 272
PtPedVvqQYteliGrPalPPyWsLGfHlCRWGYknvsetvetVvdgmrk
PtPe+V+qQY+++iG+P+lP+yW+LG++l+R+GYk ++e ++t +++ r+
R05F9.12 273 PTPEMVTQQYLKFIGKPFLPAYWALGYQLSRYGYKGLAE-MKTRIQAVRD 321
anIPlDviWlDIDYMdfgykDFTwDpvrFpgpemrdfvdkLhknGqkyVv
a+IP D+ ++DIDYM+ +ykDFT++ ++++g+ d+v+ +h++G+k+++
R05F9.12 322 AGIPIDIGVADIDYMQ-RYKDFTTG-DDWAGFS--DYVKTMHDWGMKLIL 367
IlDPaIsvdspnn....atdasYypyerGkeV.q.IkgvfvKnpnGsdyi
I+DPaI++++p++++ a++a+++++e ++V++ I++++++ +++++++
R05F9.12 368 IFDPAIEATYPSFqraiAANAKFIEWETKAQVqTaIQNLYPMAKDTKIML 417
GeVWPGstkVafPDFtnPanearkWWadeikdfhekgslpfDGiWiDMNE
G VWP+++ VafPDF++ +n+++ WW +e+ ++++ ++ fDGiWiDMNE
R05F9.12 418 GVVWPDNH-VAFPDFLDSTNNTQNWWINEFVNYQS--QVAFDGIWIDMNE 464
pSsFctGSCGtglklnpvhPpFaysypedfdavngsecksisaasqaata
pS+F+t ++d+ ++ ++
R05F9.12 465 PSNFGT----------------------NQDHPWYFDSD----------- 481
Tstpgpg.snLny..........PPYaipnd.v.gedgp...lsskTmcm
++p++ L ++++++++ + PPY+++++ g+ + + lss T+cm
R05F9.12 482 ---DHPNdAPLFCptngsspwemPPYKTRAVwRfGDANSgafLSSNTLCM 528
davhyggsdstrvehYdvHNLYGlsearATyeALlkvtpgkkrRPFvlSR
a++ gg + ++Y+v+NLYGl+ea+ T +AL k t g kr ++v SR
R05F9.12 529 LAQQDGG---K-QRFYNVKNLYGLTEAINTQKALFKAT-G-KR-GAVVSR 571
STFaGSGRyagHWtGDNtAsWddLkySessIpgvLsFnLfGiPfvGADIC
ST++++GRyagHW+GDNtA+W+dL++S ++g+++FnLfGiP+vG+D+C
R05F9.12 572 STYPSAGRYAGHWLGDNTARWEDLRTS---VIGAQEFNLFGIPYVGSDVC 618
GFngEntteaELCvRWmQlGAFyPFsRNHnhlgtirQEPylfdsvsllae
GF g tte ELC+RW+Q+GAF++F+RNHn++g+++Q+P++++sv a+
R05F9.12 619 GFIG-TTTE-ELCLRWQQMGAFHSFFRNHNTIGAPAQDPAVWPSV---AA 663
asRkalnlRYtLLPYlYTLfyeAhvtGePVmRPLffEFPdDaetydidrQ
a++ka+ +RY++LPYl++L+++A+++G++V+RP+ffE+P Daet+++ ++
R05F9.12 664 ATKKANLFRYQYLPYLFSLHFTASLSGATVIRPVFFEYPTDAETFNLGYE 713
FLwGsaLLVtPVLepgatsvkaYfP.grWYdlytweGvyTydakeasrgk
F+wGs +LV+PV ++g+tsv+aY+P++rWY+l++ y+++++++++
R05F9.12 714 FMWGSRILVAPVIYQGTTSVNAYLPtDRWYSLFD------YRYGSIMSPG 757
nvtlsAPl.dhIPvhvRGGsIiPtqeparaltttesrqnPfgLlvAlddn
+ t++AP +++IPv+vRG s+iP+q+p+ +ttt++r+nPf+Ll+A+++
R05F9.12 758 YATVPAPTtSRIPVFVRGYSVIPRQTPS--ITTTATRSNPFELLIAPCPL 805
gtAsGeLylDDGesidtkasfekgdyllvqFsasnntltgfssisnevvs
g+ +G+Ly+DDGe+i+++ f+++dy++++F+++ +t tg ++v+
R05F9.12 806 GMGEGTLYWDDGETIVND--FNSYDYHQFDFMYN-STATG-----GSVTI 847
geykfstnltlekvtIlGvgnepkqvlf<-*
++ k+s++++l++ +I++++n+p++++f
R05F9.12 848 THSKKSSKISLPTLDIIEIFNYPSAPNF 875