Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/R06A10.4
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Query: R06A10.4 CE12518 protein kinase status:Partially_confirmed TR:O44747 protein_id:AAB96730.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
pkinase Protein kinase domain 258.0 1.2e-73 1
PspC PspC domain 7.7 1.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PspC 1/1 249 268 .. 46 65 .] 7.7 1.8
pkinase 1/1 71 322 .. 1 294 [] 258.0 1.2e-73
Alignments of top-scoring domains:
PspC: domain 1 of 1, from 249 to 268: score 7.7, E = 1.8
*->fGlglllYiilalilPpeed<-*
+ g+++Yi+++ i+P ++d
R06A10.4 249 WAVGVIAYILMSGIMPFDDD 268
pkinase: domain 1 of 1, from 71 to 322: score 258.0, E = 1.2e-73
*->yelleklGeGsfGkVykakhkdktgkiVAvKilkkekesikekrflr
ye+l ++G+Gsf++V +++h+ t k +AvK+++ + +
R06A10.4 71 YEVLAVVGKGSFSQVLRVQHR-VTRKYFAVKVVN--GDCGA---VNN 111
EiqilkrLsHpNIvrligvfedtddhlylvmEymegGdLfdylrrnggpl
E+ il rLsHp+++rl +vf ++++l +vm+++ gG+++d+++++g ++
R06A10.4 112 ELNILSRLSHPFVIRLEEVFK-SSSKLFIVMQMASGGEMYDRVVAKG-RY 159
sekeakkialQilrGleYLHsngivHRDLKpeNILlden..dgtvKiaDF
se+ea++ + +l Gl YLHs ++ HRDLKpeN+L + ++ + i+DF
R06A10.4 160 SEEEARNALKMLLTGLTYLHSIRVTHRDLKPENLLYADSrpEARLLITDF 209
GLArlle.sssklttfvGTpwYmmAPEvilegrgysskvDvWSlGviLyE
GLA + ++++++t +GTp+Y+ APE+ l++ +y+ kvD+W++Gvi y
R06A10.4 210 GLAYQATkPNETMTETCGTPEYI-APEL-LLRVPYTQKVDMWAVGVIAYI 257
lltggplfpgadlpaftggdevdqliifvlklPfsdelpktridpleelf
l++g Pf+d ++r + + ++
R06A10.4 258 LMSG--------------------------IMPFDD---DCRSRLYTHII 278
riikrpglrlplpsncSeelkdLlkkcLnkDPskRpGsatakeilnhpwf
++ + + ++s +k++++++L+ + +R+ + ++++h w+
R06A10.4 279 TANYV--YYPQFWSGSEL-AKQFVDSLLETNSVERL---SSSAAMKHEWL 322
<-*
R06A10.4 - -