hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/R06A4.10
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Query:  R06A4.10  CE21114  locus:acr-20 nicotinic acetylcholine receptor status:Partially_confirmed TR:Q9U398 protein_id:CAB51466.1

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N
--------       -----------                              -----    ------- ---
Neur_chan_LBD  Neurotransmitter-gated ion-channel lig   253.3    3.4e-72   1
Neur_chan_memb Neurotransmitter-gated ion-channel tra    21.9    1.3e-05   2
YjgP_YjgQ      Predicted permease YjgP/YjgQ family        6.7       0.82   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
Neur_chan_LBD    1/1      85   299 ..     1   246 []   253.3  3.4e-72
Neur_chan_memb   1/2     306   367 ..     1    59 [.    29.8  6.1e-08
YjgP_YjgQ        1/1     301   371 ..     1    72 [.     6.7     0.82
Neur_chan_memb   2/2     583   601 ..   273   291 .]    -5.2  1.2e+03

Alignments of top-scoring domains:
Neur_chan_LBD: domain 1 of 1, from 85 to 299: score 253.3, E = 3.4e-72
                   *->etrLlddLlentvsgYdkrvRPv.nggdvPpvtVsvgltlqqiisVd
                      ++++ +++l++    Y+  ++P     + P ++V++++ l+qiisV+
    R06A4.10    85    QYEIANKILDK----YNAGLIPSmGKKS-P-IEVHFSMELYQIISVN 125

                   EknqdlttnvwlrqgqWtDpRLaWnpsdplddeddyggikslrlpsddeh
                   E++q l +n+w+ + +WtD  L W+p+        +g+++++ lp++
    R06A4.10   126 EPQQFLMLNAWVVE-RWTDRLLGWDPEK-------FGNVTEIMLPHH--- 164

                   dmldkIWlPDiflyNqttskadgnhdvttpntnvrvypgl..k.dGtVlw
                       +IWlPD+ lyN    +  ++ d      ++ v+  l++++   +
    R06A4.10   165 ----FIWLPDTTLYN----SLVMKDDENRRLLHAKVTT-LgeGnGAFIEL 205

                   sppaiykssCpmdltyFPFDqQnCslkFgSwtYngdevdlqwkddleeid
                   ++p iyk+sC ++l++FPFD+Q+C l FgSwt++  ++d++  ++ + i
    R06A4.10   206 LYPTIYKLSCLLNLRFFPFDVQSCRLLFGSWTFDNTKIDYFAFNESQAIG 255

                   LpdFtengeWdlldvpakrnekpygcyselsgagLnklvYpditfyfvlr
                     + +en+ W++l++++ r+e++y+c++++         Y+ + f ++++
    R06A4.10   256 TTNCIENEGWNVLSTSVIRHENKYDCCPNN---------YTLLEFRLTIQ 296

                   Rkp<-*
                   Rkp
    R06A4.10   297 RKP    299

Neur_chan_memb: domain 1 of 2, from 306 to 367: score 29.8, E = 6.1e-08
                   *->liiPCvLIsfLswLvFy....LPsDaGPeKvtLgIsvLLtlTvFlll
                      liiP   I+f s+  F+++++++     eK+tLgI++LL+++ + +
    R06A4.10   306    LIIPTSIITFISIIGFFstssINEPRE-EKITLGITTLLSMSILIFM 351

                   ireilPkTSlvvPLig<-*
                   +++++P+TS  +PLig
    R06A4.10   352 VSDKMPSTSSFIPLIG    367

YjgP_YjgQ: domain 1 of 1, from 301 to 371: score 6.7, E = 0.82
                   *->RYllrevlktflaillvLlalfsiiqlldllgl.vlldggvsallll
                       Y++  +++t +++++++++ f+++ ++ + + ++++ g ++ ll +
    R06A4.10   301    YYIINLIIPTSIITFISIIG-FFSTSSINEPREeKITLG-ITTLLSM 345

                   lllllslPrllplllPlavliaallt<-*
                   ++l++++   +p +  ++ li++++t
    R06A4.10   346 SILIFMVSDKMPSTSSFIPLIGLFYT    371

Neur_chan_memb: domain 2 of 2, from 583 to 601: score -5.2, E = 1.2e+03
                   *->RlflwiFpivfvlGTlgyf<-*
                      R+fl+ F++ fvl ++g+
    R06A4.10   583    RIFLITFLFIFVLTSIGIN    601

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