Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/R06A4.7
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Query: R06A4.7 CE28067 locus:mes-2 SET domain status:Partially_confirmed TR:O62335 protein_id:CAB05589.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
SET SET domain 131.4 1.7e-35 1
NSF Aromatic-di-Alanine (AdAR) repeat 12.9 0.23 1
CXC Tesmin/TSO1-like CXC domain 6.4 2.9 1
Pept_tRNA_hydro Peptidyl-tRNA hydrolase 5.1 2.7 1
Gly_kinase Glycerate kinase family 4.3 1.5 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Pept_tRNA_hydro 1/1 45 70 .. 159 184 .. 5.1 2.7
Gly_kinase 1/1 435 458 .. 359 381 .] 4.3 1.5
NSF 1/1 573 584 .. 1 12 [] 12.9 0.23
CXC 1/1 564 606 .. 1 42 [] 6.4 2.9
SET 1/1 615 743 .. 1 265 [] 131.4 1.7e-35
Alignments of top-scoring domains:
Pept_tRNA_hydro: domain 1 of 1, from 45 to 70: score 5.1, E = 2.7
*->paErpllekaldkaiealemiieghg<-*
+++++++e++++++ie++++ + gh+
R06A4.7 45 FSSEKIKETVCEQGIEECKRMLKGHF 70
Gly_kinase: domain 1 of 1, from 435 to 458: score 4.3, E = 1.5
*->ahaatnLmrtArnv.AarLkisqn<-*
++a+ +m+ A nv+A+rLk +q+
R06A4.7 435 RDAYHLMMSMAENVsARRLKMGQP 458
NSF: domain 1 of 1, from 573 to 584: score 12.9, E = 0.23
*->AakcyekAaniy<-*
A++cy+kA+ +y
R06A4.7 573 AGQCYTKACQCY 584
CXC: domain 1 of 1, from 564 to 606: score 6.4, E = 2.9
*->rhkkGCnCKkSkClKkYCeCyqakvlCs.snCkCvgCknveek<-*
+ GCnC +C k C Cy a+ C ++ C+ C + +
R06A4.7 564 QRFPGCNCAAGQCYTKACQCYRANWECNpMTCNMCKCDAIDSN 606
SET: domain 1 of 1, from 615 to 743: score 131.4, E = 1.7e-35
*->vqkgrwarlegfkt...GwGlrAtedIpkGefiiEYpGelitseeae
+++ +++r + + ++ G Gl+ +e+ +k+efi EY+Ge i+++eae
R06A4.7 615 MTRMIQKRTYCGPSkiaGNGLFLLEPAEKDEFITEYTGERISDDEAE 661
kreddllgpkyydddgdksldeYlfdldalfLlrEkleSWkpYiiLPkty
+r+ ++yd++ + Y+f++
R06A4.7 662 RRG------AIYDRYQCS----YIFNIET--------------------- 680
dsPlfWseeellLkGTllevdeeelkeykdllaeeievflqlklFpdvet
R06A4.7 - -------------------------------------------------- -
eefsyedylWaasivSRafslvegvnreeenseeelglviDatrkGNlaR
g iD+ + GNlaR
R06A4.7 681 ------------------------------------GGAIDSYKIGNLAR 694
FiNHSCs.PNcevqvvfvdgedlgtsseeetDAeekaglepgdprivifA
F+NH+ ++P c+++ + v g++ri+++A
R06A4.7 695 FANHDSKnPTCYARTMVVA----------------------GEHRIGFYA 722
lrdIkaGeELtydYgydlsnge<-*
+r+ + eELt+dY +++++
R06A4.7 723 KRRLEISEELTFDYS-YSGEHQ 743