Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/R06B10.3
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Query: R06B10.3 CE26979 status:Partially_confirmed TR:O44871 protein_id:AAK21450.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
lectin_c Lectin C-type domain 63.8 3.5e-15 1
neur Neuraminidase 0.9 8.4 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
neur 1/1 100 114 .. 473 487 .] 0.9 8.4
lectin_c 1/1 44 149 .. 1 125 [] 63.8 3.5e-15
Alignments of top-scoring domains:
neur: domain 1 of 1, from 100 to 114: score 0.9, E = 8.4
*->gsWSWpDGAdlpffi<-*
gsW W DG dl f+
R06B10.3 100 GSWEWIDGLDLVFMN 114
lectin_c: domain 1 of 1, from 44 to 149: score 63.8, E = 3.5e-15
*->esktWaeAelaCqkegghAHLvsIqsaeEqsfvvafltsltkk...s
+ ++++Ae+aC gg HL+s+ s + +fl +l ++++
R06B10.3 44 GAASFHDAEKACYDYGGY-HLASVPSMIDN----NFLYNLSSNsnvW 85
ntyaWIGLtdintegtwvwegwetdgspvnytenWapgePnnrgnhGgnE
+y+WIGLtd + +g+w+w +dg ++++ nWa+ + +
R06B10.3 86 ANYFWIGLTDMTADGSWEW----IDGLDLVFM-NWASSST--------AG 122
dCveiytdtdflaGkWnDepCdsklpyvCef<-*
+C+++++ d +W +C +++p+ C+
R06B10.3 123 YCGAMRAA-D---ARWQAQDCTKPYPFFCYG 149