Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/R06C7.1
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Query: R06C7.1 CE06244 status:Partially_confirmed TR:Q21770 protein_id:CAA95839.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Piwi Piwi domain 456.7 1.9e-133 1
PAZ PAZ domain 159.6 1.2e-44 1
DNA_ligase_A_C ATP dependent DNA ligase C terminal r 5.5 5.7 1
arrestin_C Arrestin (or S-antigen), C-terminal d 4.0 9.6 1
DUF355 Protein of unknown function (DUF355) 3.7 1.8 1
PAX 'Paired box' domain 3.0 9.5 1
chorismate_bind chorismate binding enzyme 2.9 7 1
THF_DHG_CYH Tetrahydrofolate dehydrogenase/cycloh 1.6 6.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
THF_DHG_CYH 1/1 305 326 .. 1 22 [. 1.6 6.1
chorismate_bind 1/1 343 354 .. 268 280 .] 2.9 7
PAZ 1/1 321 455 .. 1 161 [] 159.6 1.2e-44
arrestin_C 1/1 466 492 .. 144 169 .] 4.0 9.6
DNA_ligase_A_C 1/1 520 535 .. 57 73 .] 5.5 5.7
PAX 1/1 547 559 .. 1 13 [. 3.0 9.5
Piwi 1/1 596 906 .. 1 341 [] 456.7 1.9e-133
DUF355 1/1 925 935 .. 147 157 .] 3.7 1.8
Alignments of top-scoring domains:
THF_DHG_CYH: domain 1 of 1, from 305 to 326: score 1.6, E = 6.1
*->mgAqiidGkalAqeiraelaqe<-*
++ +idG+++A ++++ ++q+
R06C7.1 305 NPSLVIDGMKAAFHKEQTVIQK 326
chorismate_bind: domain 1 of 1, from 343 to 354: score 2.9, E = 7
*->TenKaralllkal<-*
T++Ka+a++ k l
R06C7.1 343 TREKAAAVI-KGL 354
PAZ: domain 1 of 1, from 321 to 455: score 159.6, E = 1.2e-44
*->lpvlelledyltertsiklsdrdrkkvkealkGlkVetthrnnkglq
++v+++l d++++++s++l++++r+k++ ++kGl+++ t+ n
R06C7.1 321 QTVIQKLFDITGQDPSNGLNNMTREKAAAVIKGLDCYSTYTN----- 362
eaprkykiaglssnpaplskFplkdnnGneegkeitvaeYFkekYnirLk
++r+ +i+g+ +++a +++F+l d gk++++aeY+ +kY+i L+
R06C7.1 363 -RKRHLRIEGIFHESATKTRFELPD------GKTCSIAEYYADKYKISLQ 405
ypdlPllvvggrsknlNlLPRfnkrnsqknylPpELcsivpgQrytkklf
yp+ +l+v++ r++n ny+P EL+ ++ +Qr+t+++
R06C7.1 406 YPNANLVVCKDRGNN--------------NYFPAELMTVSRNQRVTIPQQ 441
erqtsalikkraqr<-*
+ ++s++++k++++
R06C7.1 442 TGNQSQKTTKECAV 455
arrestin_C: domain 1 of 1, from 466 to 492: score 4.0, E = 9.6
*->ggklltppllggel.lelPiviGtvPl<-*
+gk+ ++++l +el + l i++ + Pl
R06C7.1 466 TGKNAVNITLENELlVALGIKVYSEPL 492
DNA_ligase_A_C: domain 1 of 1, from 520 to 535: score 5.5, E = 5.7
*->ppywrvepkklvpdvwf<-*
pp w+v p + vpd w+
R06C7.1 520 PPGWFVKP-ATVPDLWA 535
PAX: domain 1 of 1, from 547 to 559: score 3.0, E = 9.5
*->gqgrvnqLGGvFv<-*
+ g+vnqL G+F+
R06C7.1 547 SIGDVNQLVGMFI 559
Piwi: domain 1 of 1, from 596 to 906: score 456.7, E = 1.9e-133
*->livvvlpddnkedlekflydeiKkreltelgipsQcvllktlkkksk
v++++dd + +l + ++K++e+ +++ Q+++ ++++ ++k
R06C7.1 596 KYVLMITDDAIVHL----HKQYKALEQRT-MMIVQDMKISKANAVVK 637
qGgrltltNvilkanmKlGGlNyklniekeprckVCNemrviplkptlii
+G+rltl+N+i+k+n+KlGGlNy+++++k++ +++ +lii
R06C7.1 638 DGKRLTLENIINKTNVKLGGLNYTVSDAKKS-----------MTDEQLII 676
GfDvshppaRTkfDrenggrlnnpsvagvvasmdsphgtkfrgdvrlqpa
G++vs+ppa+Tk++++n+g+ln p+++g+++++ +++f gd++l p+
R06C7.1 677 GVGVSAPPAGTKYMMDNKGHLN-PQIIGFASNAV--ANHEFVGDFVLAPS 723
gqElltdlkkgiiresLrsfykntrkkkPkrIivYRDGvSEGqfsqvlny
gq++++++++ +++s+ f+kn++ +PkrIi+YR+G+SEG+++++l+y
R06C7.1 724 GQDTMASIED-VLQNSIDLFEKNRK-ALPKRIIIYRSGASEGSHASILAY 771
EvnqikeackklsesyqeqePkltvIvvqKrHhtRfFasdksdggskaka
E+++++++++ +s+ ++ l +Ivv+K H++RfF + ++gg ka++
R06C7.1 772 EIPLARAIIHGYSKEIK-----LIFIVVTKEHSYRFFRDQLRSGG-KATE 815
qNvpPGTvVDdkitspeyydFylcsqagrqGTvkPthYtVlyDdigeyyl
+N+pPG+v+D+++t+p++++F+l++++++qGT+k++ YtVl+Dd++
R06C7.1 816 MNIPPGIVLDNAVTNPACKQFFLNGHTTLQGTAKTPLYTVLADDCK---A 862
sadelqdLTykLCymyqrvtrpvslPaPvyYAhllAkrgrnnlk<-*
++d l++LT+ LC+++q+v+ ++s+P+P+y+A+++Akrgr ++
R06C7.1 863 PMDRLEELTFTLCHHHQIVSLSTSIPTPLYVANEYAKRGRDLWG 906
DUF355: domain 1 of 1, from 925 to 935: score 3.7, E = 1.8
*->reLLRkIGYKl<-*
+eL +IGYK+
R06C7.1 925 KELTKEIGYKQ 935