Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/R06C7.3a
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Query: R06C7.3a CE30293 locus:dhp-1 dihydropyrimidinase status:Confirmed SW:Q21773
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Amidohydro_1 Amidohydrolase family 78.3 2.5e-21 1
aakinase Amino acid kinase family 6.4 1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
aakinase 1/1 229 245 .. 295 313 .] 6.4 1
Amidohydro_1 1/1 52 404 .. 1 479 [] 78.3 2.5e-21
Alignments of top-scoring domains:
aakinase: domain 1 of 1, from 229 to 245: score 6.4, E = 1
*->rAailavrsgvgipviItn<-*
rA++la+++ ++pv+I++
R06C7.3a 229 RACVLAAQA--NCPVYIVH 245
Amidohydro_1: domain 1 of 1, from 52 to 404: score 78.3, E = 2.5e-21
*->ivlPGlIPdDaHvHlrqsalrGgsaddlpLldWLnkliwpleaelvs
+v+PG+I D H+H ++ ++
R06C7.3a 52 LVIPGGI--DPHTHMQMPYMG-------------------------- 70
eedsyealllgaeemlrsGtTtvldt..pvtrantdgk.gvplmleea.k
e + +l+g+e+++++GtT+++d+ p r +++ g +++ +a+
R06C7.3a 71 -EVTKDDFLKGTEAAVAGGTTMIIDFccPDHRNGESLIaGYNRWRSWAdP 119
tplqfyfllpscvpareeideglaa....apkleplmslllkgevggrae
+ +++y+l++ ++ +r e+ e +a ++++ ++ +++++++ +
R06C7.3a 120 KVCCDYGLSVAITMWRPETAEQMAIitspEFGVNSFKFYMAYENTLM--- 166
lgevvidraageav.fvfpDGMaigvasdevrkavrevlkegadlikkia
+++++ + ++a
R06C7.3a 167 --------VRDDELfRG----------------------------MQECA 180
daakgakaidgvlpalaphdpptvsheelkaavelaeeteeaeklgllvh
++++ a ++++ +++ ++++ ++++ + + + +++ee e+++++++
R06C7.3a 181 KLRALARVHCENGSVIKEKEIDLLAKGVTGPEGHTQSRPEEIEAEATNRA 230
iHaaeasgeIFDREeFikLpLkFPhLkevvehlttkgmspverlakkagv
+ +a + + +++++h++tkg++ ++ +++ g
R06C7.3a 231 CVLAAQANC-----------------PVYIVHVMTKGAASAISHHRAQGS 263
.v.iianvatsttdhlgll.knaikggvdllaHclhLdkrededvalQel
v +++++a ++ d + ++++++ + + + l d++++e l
R06C7.3a 264 iVfGEPIAAGLALDGSHYYnEDWLHAARYVMSPPLSRDPTTPE------L 307
lkernqLveaagsgvahcplsnesvphdggkksllegda.gmgelgsgia
l + + + ++++ +d++ ksl g ++++ g+
R06C7.3a 308 LMKL-------LAAGELHLTGTDNCTYDCRQKSLGKGNFtKIPNGINGVE 350
rlaelaekagvnrGpVglGTDtdaGansnnsldlleemkaflllggpkfy
+ + + ++gv G
R06C7.3a 351 DRMSVVWEKGVHSGI----------------------------------- 365
gldpnllspaealrmaTinpAralGlddklGsievGkdADlvvvd<-*
++p++++ ++ +A++++++ ++G+i+vG dAD+v+++
R06C7.3a 366 ------IDPMRYVSITSSTAAKIFNIYPRKGRIAVGSDADIVIFN 404