Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/R07B1.10
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Query: R07B1.10 CE26721 locus:lec-8 galaptin domain status:Confirmed SW:Q09610 protein_id:CAA88548.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Gal-bind_lectin Galactoside-binding lectin 231.0 7.9e-66 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Gal-bind_lectin 1/1 10 137 .. 1 139 [] 231.0 7.9e-66
Alignments of top-scoring domains:
Gal-bind_lectin: domain 1 of 1, from 10 to 137: score 231.0, E = 7.9e-66
*->pglvalnlglkpGktltVkGtVapknakrFavNlgkgskEEndlvLH
p+++a++++l++G++++V+G+V++k++k+F+v+l++g +++vLH
R07B1.10 10 PSAHAIREQLRAGSEIHVRGHVTHKHHKDFSVELLSG----PHIVLH 52
fNPRFneaHGDqntvVcNSkenGDNeWGtEqReaafPFqaGqpFeisIsv
+N+RF+++H +v +N+++nG +WG+E+R +++P++++++F++sI+v
R07B1.10 53 VNFRFEHDH----IVAMNTCTNG--AWGAEIR-HHNPLKHHDHFNLSIHV 95
eedkfkVkvndghefeFphRlkleavqyLgikGDikltsikf<-*
+e++++++vn++h+++FphR+++e+vq++g+kG++++++i+f
R07B1.10 96 HEGYYHISVNGEHLADFPHRFPVESVQAIGLKGAAHIDEISF 137