Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/R07B1.10
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Query:  R07B1.10  CE26721  locus:lec-8 galaptin domain status:Confirmed SW:Q09610 protein_id:CAA88548.2

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
Gal-bind_lectin Galactoside-binding lectin              231.0    7.9e-66   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
Gal-bind_lectin   1/1      10   137 ..     1   139 []   231.0  7.9e-66

Alignments of top-scoring domains:
Gal-bind_lectin: domain 1 of 1, from 10 to 137: score 231.0, E = 7.9e-66
                   *->pglvalnlglkpGktltVkGtVapknakrFavNlgkgskEEndlvLH
                      p+++a++++l++G++++V+G+V++k++k+F+v+l++g    +++vLH
    R07B1.10    10    PSAHAIREQLRAGSEIHVRGHVTHKHHKDFSVELLSG----PHIVLH 52

                   fNPRFneaHGDqntvVcNSkenGDNeWGtEqReaafPFqaGqpFeisIsv
                   +N+RF+++H    +v +N+++nG  +WG+E+R +++P++++++F++sI+v
    R07B1.10    53 VNFRFEHDH----IVAMNTCTNG--AWGAEIR-HHNPLKHHDHFNLSIHV 95

                   eedkfkVkvndghefeFphRlkleavqyLgikGDikltsikf<-*
                   +e++++++vn++h+++FphR+++e+vq++g+kG++++++i+f
    R07B1.10    96 HEGYYHISVNGEHLADFPHRFPVESVQAIGLKGAAHIDEISF    137



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