Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/R07E4.6a
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Query: R07E4.6a CE04821 locus:kin-2 status:Partially_confirmed SW:P30625 protein_id:AAA80405.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
cNMP_binding Cyclic nucleotide-binding domain 221.1 1.7e-62 2
RIIa Regulatory subunit of type II PKA R-subu 64.0 2.4e-16 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
RIIa 1/1 30 67 .. 1 39 [] 64.0 2.4e-16
cNMP_binding 1/2 147 235 .. 1 120 [] 110.7 5.7e-30
cNMP_binding 2/2 265 359 .. 1 120 [] 111.7 3e-30
Alignments of top-scoring domains:
RIIa: domain 1 of 1, from 30 to 67: score 64.0, E = 2.4e-16
*->hglqaLLedltveVlraqPsDlvqFaadYFnekLeeqRa<-*
h++q+L+++++v++++++P+++v F++d+F ekL+eqRa
R07E4.6a 30 HNIQQLVKEAIVVLCIHKPDNPVLFLKDHF-EKLNEQRA 67
cNMP_binding: domain 1 of 2, from 147 to 235: score 110.7, E = 5.7e-30
*->aleersypaGeviirqGdpgdsfYivlsGevevykltedGartpevs
a+++++ aGe+ii+qG++gd+fY++ +G+v+vy+
R07E4.6a 147 AMFPVEKSAGETIIEQGEEGDNFYVIDKGTVDVYV------------ 181
qkqdtreqvvatlgpGdfFGElalltndgnknavlpsldqgaprtatvrA
+ + v t+ +G++FGElal+++ +pr+atv+A
R07E4.6a 182 -----NHEYVLTINEGGSFGELALIYG--------------TPRAATVIA 212
ltdsellrldredFrrllqkype<-*
+td++l+++dr ++rr+l+ +
R07E4.6a 213 KTDVKLWAIDRLTYRRILMGSVT 235
cNMP_binding: domain 2 of 2, from 265 to 359: score 111.7, E = 3e-30
*->aleersypaGeviirqGdpgdsfYivlsGevevykltedGartpevs
ale+ +++G+ +++qG+pgd+f+i+l+Ge+ v+++++d
R07E4.6a 265 ALERCDFEPGTHVVEQGQPGDEFFIILEGEANVLQKRSDD------- 304
qkqdtreqvvatlgpGdfFGElalltndgnknavlpsldqgaprtatvrA
+ vv++lg d+FGE+all + +pr+atv+A
R07E4.6a 305 ----APFDVVGHLGMSDYFGEIALLLD--------------RPRAATVVA 336
ltdsellrldredFrrllqkype<-*
+t ++ +ldr++F+r++++ e
R07E4.6a 337 KTHLKCIKLDRNRFERVMGPVRE 359