Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/R07E5.10
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Query: R07E5.10 CE18125 Apoptosis protein RP-8 status:Partially_confirmed TR:Q21826 protein_id:CAA83630.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PDCD2_C Programmed cell death protein 2, C-terminal 96.0 5.3e-28 1
zf-MYND MYND finger 65.8 1.8e-20 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
zf-MYND 1/1 146 182 .. 1 43 [] 65.8 1.8e-20
PDCD2_C 1/1 270 384 .. 54 173 .. 96.0 5.3e-28
Alignments of top-scoring domains:
zf-MYND: domain 1 of 1, from 146 to 182: score 65.8, E = 1.8e-20
*->CanCgkeatksrqLkkCsrCknarYCSkeCQrkdWllgHkreC<-*
C+ Cg++a+k kC +C++arYCS+ +Q+ dW+ +Hk eC
R07E5.10 146 CRICGCSAAK-----KCAKCQVARYCSQAHQVIDWP-AHKLEC 182
PDCD2_C: domain 1 of 1, from 270 to 384: score 96.0, E = 5.3e-28
*->eElDkYfakseakdDkiFrkFKkkialEPdQIlRYkRGikPlWIsnt
e lD a e D F kF + + l PdQI+RYkR ++Pl ++
R07E5.10 270 EDLDE--ATAEQPKDIDFDKFNRLVNLQPDQIIRYKRYGQPLRATG- 313
vktveDQlkdlPdCiACGakRiFEFQvMPQlLtlLkddRLGRslDWGVLA
+ + C CGa R FE Q MP lL l d +G s+DW
R07E5.10 314 LSELP---EVVEPCELCGAPRRFEMQLMPHLLSLIDVDAIGQSIDWASVY 360
VyTCAkSCsl.dsGYvEElliKQD<-*
VyTC SC + d GY E++ KQD
R07E5.10 361 VYTCSASCQIaDDGYAKEFVAKQD 384