hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/R08B4.2
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Query:  R08B4.2  CE03536   homeobox protein (otd subfamily) status:Partially_confirmed TR:Q21836 protein_id:CAA92001.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
homeobox Homeobox domain                                117.0    3.7e-31   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
homeobox   1/1     118   174 ..     1    57 []   117.0  3.7e-31

Alignments of top-scoring domains:
homeobox: domain 1 of 1, from 118 to 174: score 117.0, E = 3.7e-31
                   *->RrkRTtFtpeQleeLEkeFqknpYPsreeReeLAkkLgLterqVkvW
                      Rr RTtF++ Ql+eLEk+F++++YP++++ReeLA + +Lte++V+vW
     R08B4.2   118    RRYRTTFSAFQLDELEKVFARTHYPDVFTREELATRVQLTEARVQVW 164

                   FQNRRaKwKk<-*
                   FQNRRaK++k
     R08B4.2   165 FQNRRAKYRK    174

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