Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/R08C7.8
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: R08C7.8 CE07431 serine\/threonine protein phosphatase status:Partially_confirmed TR:Q21840 protein_id:AAC48076.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Metallophos Calcineurin-like phosphoesterase 85.1 1.4e-21 2
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Metallophos 1/2 54 113 .. 1 58 [. 52.9 7.2e-13
Metallophos 2/2 114 217 .. 81 124 .] 31.8 3.3e-07
Alignments of top-scoring domains:
Metallophos: domain 1 of 2, from 54 to 113: score 52.9, E = 7.2e-13
*->mrilvigDlHggfedlllllela.e.kpdlvlflGDlvdrgppslev
++i+++gD+Hg++++l++ +++++ ++ +lflGD+vdrg s ev
R08C7.8 54 HPITIVGDIHGQLDALIRYFDAVgYpPKVQFLFLGDYVDRGAKSFEV 100
llllfalklkapg<-*
lllf++k+++p+
R08C7.8 101 SLLLFCYKIRYPH 113
Metallophos: domain 2 of 2, from 114 to 217: score 31.8, E = 3.3e-07
*->leef.lllla.lvdgkillvHgglspd....................
l++f++l+l+ v+ +il++Hgg+s +++++ + ++++ + +
R08C7.8 114 LNVFnELPLCaRVGQRILCMHGGISQNcnswesfkalkkpntpltcd 160
....................................leellk.ngvdlvi
++ + + ++ ++ + ++ + + + ++l+++lk++g+ l++
R08C7.8 161 eglqvdlmwadptqdkcntfamnkqraisvvfgqkgLDDFLKkLGLSLIV 210
rGHtH.p<-*
r+H+ ++
R08C7.8 211 RAHEVsQ 217