Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/R09A1.2
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Query: R09A1.2 CE18128 status:Partially_confirmed TR:O61932 protein_id:AAC17776.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
BTB BTB/POZ domain 81.6 4.7e-21 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
BTB 1/1 71 176 .. 1 137 [] 81.6 4.7e-21
Alignments of top-scoring domains:
BTB: domain 1 of 1, from 71 to 176: score 81.6, E = 4.7e-21
*->lnelreng.elcDVtlvvgdgegknevtSgkefkAHKavLaAcSpYF
l + + +elcDVtl ++d ++++AH++ LaA+Sp F
R09A1.2 71 LRDDYSGArELCDVTLRFDD----------ESIPAHWVMLAAYSPAF 107
kalFtgnfkestteeessviseielddvspedfealLefiYtgelsitqe
+ F+ ++ ++ +e++ + ++++ +L++iY g++ +
R09A1.2 108 AEKFRKP--------NKCFV--LEMQPLDKTSVKRVLDYIYFGKVTFR-- 145
qksPssckseenveelLelAadklqipslvdaCeefliknl<-*
++ e L++ ++++i l++ +e+ l++
R09A1.2 146 ---------LATLHEDLKAI-SYFEIVTLQEDVEKRLVELA 176