Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/R09A1.2
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Query:  R09A1.2  CE18128    status:Partially_confirmed TR:O61932 protein_id:AAC17776.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
BTB      BTB/POZ domain                                  81.6    4.7e-21   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
BTB        1/1      71   176 ..     1   137 []    81.6  4.7e-21

Alignments of top-scoring domains:
BTB: domain 1 of 1, from 71 to 176: score 81.6, E = 4.7e-21
                   *->lnelreng.elcDVtlvvgdgegknevtSgkefkAHKavLaAcSpYF
                      l + +   +elcDVtl ++d          ++++AH++ LaA+Sp F
     R09A1.2    71    LRDDYSGArELCDVTLRFDD----------ESIPAHWVMLAAYSPAF 107

                   kalFtgnfkestteeessviseielddvspedfealLefiYtgelsitqe
                    + F+          ++ ++  +e++  + ++++ +L++iY g++ +
     R09A1.2   108 AEKFRKP--------NKCFV--LEMQPLDKTSVKRVLDYIYFGKVTFR-- 145

                   qksPssckseenveelLelAadklqipslvdaCeefliknl<-*
                              ++ e L++  ++++i  l++ +e+ l++
     R09A1.2   146 ---------LATLHEDLKAI-SYFEIVTLQEDVEKRLVELA    176



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